|
|
GEO help: Mouse over screen elements for information. |
|
Status |
Public on Oct 10, 2022 |
Title |
Nanostring nCounter Human Immunology V2 with panel plus |
Technology type |
other |
Distribution |
custom-commercial |
Organism |
Homo sapiens |
Manufacturer |
Nanostring |
Manufacture protocol |
https://nanostring.com/wp-content/uploads/TN_Using_nCounter_with_FFPE_Samples.pdf
|
|
|
Description |
Molecular barcoding and digital quantification of target RNA or DNA sequences
|
|
|
Submission date |
Sep 08, 2022 |
Last update date |
Oct 10, 2022 |
Contact name |
Pauline Gravelle |
E-mail(s) |
pauline.gravelle@inserm.fr
|
Organization name |
IUCT-ONCOPOLE
|
Department |
Anatomy-Pathology
|
Street address |
1 Avenue Irène Joliot Curie
|
City |
TOULOUSE |
ZIP/Postal code |
31059 |
Country |
France |
|
|
Samples (66)
|
GSM6560831, GSM6560832, GSM6560833, GSM6560834, GSM6560835, GSM6560836
GSM6560837, GSM6560838, GSM6560839, GSM6560840, GSM6560841, GSM6560842, GSM6560843, GSM6560844, GSM6560845, GSM6560846, GSM6560847, GSM6560848, GSM6560849, GSM6560850, GSM6560851, GSM6560852, GSM6560853, GSM6560854, GSM6560855, GSM6560856, GSM6560857, GSM6560858, GSM6560859, GSM6560860, GSM6560861, GSM6560862, GSM6560863, GSM6560864, GSM6560865, GSM6560866, GSM6560867, GSM6560868, GSM6560869, GSM6560870, GSM6560871, GSM6560872, GSM6560873, GSM6560874, GSM6560875, GSM6560876, GSM6560877, GSM6560878, GSM6560879, GSM6560880, GSM6560881, GSM6560882, GSM6560883, GSM6560884, GSM6560885, GSM6560886, GSM6560887, GSM6560888, GSM6560889, GSM6560890, GSM6560891, GSM6560892, GSM6560893, GSM6560894, GSM6560895, GSM6560896
|
Series (1) |
GSE212902 |
Histological subtypes drive distinct prognostic immune signatures in classical Hodgkin lymphoma. |
|
Data table header descriptions |
ID |
gene ID |
Official Full GN |
Official Full Gene Name |
GB_ACC |
Official RefSeq Accession number |
ORF |
Official Gene Symbol |
SEQUENCE |
Target Sequence |
SPOT_ID |
|
Data table |
ID |
Official Full GN |
GB_ACC |
ORF |
SEQUENCE |
SPOT_ID |
ABCB1 |
ATP-binding cassette, sub-family B (MDR/TAP), member 1 |
NM_000927.3 |
ABCB1 |
TATAGCACTAAAGTAGGAGACAAAGGAACTCAGCTCTCTGGTGGCCAGAAACAACGCATTGCCATAGCTCGTGCCCTTGTTAGACAGCCTCATATTTTGC |
|
ABL1 |
c-abl oncogene 1, non-receptor tyrosine kinase |
NM_005157.3 |
ABL1 |
CTGCGTGAGCTATGTGGATTCCATCCAGCAAATGAGGAACAAGTTTGCCTTCCGAGAGGCCATCAACAAACTGGAGAATAATCTCCGGGAGCTTCAGATC |
|
ADA |
adenosine deaminase |
NM_000022.2 |
ADA |
TCCAAGAAGACCATGATCTCAATAGTCAGTTACTGATGCTCCTGAACCCTATGTGTCCATTTCTGCACACACGTATACCTCGGCATGGCCGCGTCACTTC |
|
AHR |
aryl hydrocarbon receptor |
NM_001621.3 |
AHR |
CTGCTACCACATCCACTCTAAGCAAGGACTCTCTCAATCCTAGTTCCCTCCTGGCTGCCATGATGCAACAAGATGAGTCTATTTATCTCTATCCTGCTTC |
|
AICDA |
activation-induced cytidine deaminase |
NM_020661.1 |
AICDA |
GCTGCATGAAAATTCAGTTCGTCTCTCCAGACAGCTTCGGCGCATCCTTTTGCCCCTGTATGAGGTTGATGACTTACGAGACGCATTTCGTACTTTGGGA |
|
AIRE |
autoimmune regulator |
NM_000383.2 |
AIRE |
CAGCGCCACCTCTTGTCAGTGCTCGGCTGTAAACAGCTCTGTGTTTCTGGGGACACCAGCCATCATGTGCCTGGAAATTAAACCCTGCCCCACTTCTCTA |
|
APP |
amyloid beta (A4) precursor protein |
NM_000484.3 |
APP |
TAAAGCATTTCGAGCATGTGCGCATGGTGGATCCCAAGAAAGCCGCTCAGATCCGGTCCCAGGTTATGACACACCTCCGTGTGATTTATGAGCGCATGAA |
|
ARG1 |
arginase, liver |
NM_000045.2 |
ARG1 |
AAGGAACTAAAAGGAAAGATTCCCGATGTGCCAGGATTCTCCTGGGTGACTCCCTGTATATCTGCCAAGGATATTGTGTATATTGGCTTGAGAGACGTGG |
|
ARG2 |
arginase, type II |
NM_001172.3 |
ARG2 |
ATCAGAAAATCAAGCACGTGTGAGAATTTAGGAGACACTGTGCACTGACATGTTTCACAACAGGCATTCCAGAATTATGAGGCATTGAGGGGATAGATGA |
|
ARHGDIB |
Rho GDP dissociation inhibitor (GDI) beta |
NM_001175.4 |
ARHGDIB |
ATGCATCTTTTCCCACCCTGTCACTCAACGTGGTCCCTAGAACAAGAGGCTTAAAACCGGGCTTTCACCCAACCTGCTCCCTCTGATCCTCCATCAGGGC |
|
ATG10 |
ATG10 autophagy related 10 homolog (S. cerevisiae) |
NM_001131028.1 |
ATG10 |
TCAACTATATCACATCATGGCTGAGCATTGTAGGGCCAGTTGTTGGGCTGAATCTACCTCTGAGTTATGCCAAAGCAACGTCTCAGGATGAACGAAATGT |
|
ATG12 |
ATG12 autophagy related 12 homolog (S. cerevisiae) |
NM_004707.2 |
ATG12 |
CCGCTCCTCTCCCGAGGTCTGTAGTCGCGGAGAAACACATGTTGCGTTACTAACGTTCAGAGGTCTGCGACAGCTTCGATTTGAATGACTAGCCGGGAAC |
|
ATG16L1 |
ATG16 autophagy related 16-like 1 (S. cerevisiae) |
NM_198890.2 |
ATG16L1 |
CCTTCCAAAGTCGGTTCTGGCCTAACGCATGTCCCAACACCTTGGGTTCATTTGCCCGGTGAACTCACTTTAAGCATTGGATTAACGGAAACTCCCGAAC |
|
ATG5 |
ATG5 autophagy related 5 homolog (S. cerevisiae) |
NM_004849.2 |
ATG5 |
TGCAGTGGCTGAGTGAACATCTGAGCTACCCGGATAATTTTCTTCATATTAGTATCATCCCACAGCCAACAGATTGAAGGATCAACTATTTGCCTGAACA |
|
ATG7 |
ATG7 autophagy related 7 homolog (S. cerevisiae) |
NM_001136031.2 |
ATG7 |
TATGATCCCTGTAACTTAGCCCAGTACCCTGGATGGCCTTTGAGGAATTTTTTGGTCCTAGCAGCCCACAGATGGAGTAGCAGTTTCCAGTCTGTTGAAG |
|
ATM |
ataxia telangiectasia mutated |
NM_000051.3 |
ATM |
ACGCTAAGTCGCTGGCCATTGGTGGACATGGCGCAGGCGCGTTTGCTCCGACGGGCCGAATGTTTTGGGGCAGTGTTTTGAGCGCGGAGACCGCGTGATA |
|
B2M |
beta-2-microglobulin |
NM_004048.2 |
B2M |
TACTGAAGAATGGAGAGAGAATTGAAAAAGTGGAGCATTCAGACTTGTCTTTCAGCAAGGACTGGTCTTTCTATCTCTTGTACTACACTGAATTCACCCC |
|
B3GAT1 |
beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P) |
NM_018644.3 |
B3GAT1 |
GAGGGAGGCCTGAGCACACTGCTTTGGAAATTATTCTAAACACAAAAAAGGGAAAGAAAATGTTATTTCTCCCTAAGTCAGGAGCATGCAGAGCTAGCCC |
|
BATF |
basic leucine zipper transcription factor, ATF-like |
NM_006399.3 |
BATF |
CCTGGCAAACAGGACTCATCTGATGATGTGAGAAGAGTTCAGAGGAGGGAGAAAAATCGTATTGCCGCCCAGAAGAGCCGACAGAGGCAGACACAGAAGG |
|
BATF3 |
basic leucine zipper transcription factor, ATF-like 3 |
NM_018664.2 |
BATF3 |
ACATCCAACAGGCGCCAAACTCACAGAGCCCTTGTGCAGATCCAGCATGGAGGCCACCCTCAGGAGTGACTTCTCATCCACCCTGGCAGCTAGTAGGTTC |
|
Total number of rows: 586
Table truncated, full table size 95 Kbytes.
Supplementary data files not provided |
|
|
|
|
|