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Platform GPL33264 Query DataSets for GPL33264
Status Public on Apr 30, 2023
Title Agilent-087164 8x60K i-Motif array [221026 NIH Sri G4126A; condensed version]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16087164 or 2587164

The original array has 8 sectors/blocks:
Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the condensed ID of replicate probe sequences on the array
All the Probe IDs corresponding to a particular array sequence are included in the platform table
 
Submission date Mar 17, 2023
Last update date Apr 30, 2023
Contact name Srinath Seshadri
E-mail(s) sri.seshadri@nih.gov
Organization name NCI/CCR
Street address 1050 Boyle St.
City Frederick
State/province MD
ZIP/Postal code 21702
Country USA
 
Samples (25) GSM7103951, GSM7103954, GSM7103955, GSM7103956, GSM7103957, GSM7103958 
Series (1)
GSE227616 Genomic i-Motifs Display Diverse Binding Preferences Towards Small Molecules, Transcription Factors, and Antibodies

Data table header descriptions
ID Unique probe ID for each array sequence
RAW_PROBE_IDs set of array probe IDs separated by semicolons that were used to compute the median SN635 signal
SEQUENCE probe sequence on the array

Data table
ID RAW_PROBE_IDs SEQUENCE
V2_IMOTIF_1 V2_neg_control_701;V2_neg_control_702;V2_neg_control_703;V2_neg_control_704;V2_neg_control_705 AAAAGCTAAAAGAAAAAAAAATTTTTTTT
V2_IMOTIF_10 V2_neg_control_1861;V2_neg_control_1862;V2_neg_control_1863;V2_neg_control_1864;V2_neg_control_1865 AAAAATCTCAACGTTTAAAAAAAAAGAAAAGAAAATTTTTTTT
V2_IMOTIF_100 V2_neg_control_1936;V2_neg_control_1937;V2_neg_control_1938;V2_neg_control_1939;V2_neg_control_1940 TTAATGCATGCTGCATTAATGCACTGTACATTAATACTCTGTATTAATTTTTTTT
V2_IMOTIF_1000 V2_4_Cs_3206;V2_4_Cs_3207;V2_4_Cs_3208;V2_4_Cs_3209;V2_4_Cs_3210 CCCCAAACTAGACCCCAGCATCTGATCCCCTGGACACCCCTTTTTTTT
V2_IMOTIF_10000 V2_3_Cs_9296;V2_3_Cs_9297;V2_3_Cs_9298;V2_3_Cs_9299;V2_3_Cs_9300 CCCAGGCAGCTGGATTATCCCATAACCCTCACTGTGGTGCCCTTTTTTTT
V2_IMOTIF_10001 V2_3_Cs_6536;V2_3_Cs_6537;V2_3_Cs_6538;V2_3_Cs_6539;V2_3_Cs_6540 CCCTTTCACAACCTCTGGAGGCCCTGAGGGCCAGCCTGCCCACCTGTGCCCTTTTTTTT
V2_IMOTIF_10002 V2_3_Cs_6326;V2_3_Cs_6327;V2_3_Cs_6328;V2_3_Cs_6329;V2_3_Cs_6330 CCCGGGGTCCCGGGCGGGGTGGGCCCTGTGCCCTTTTTTTT
V2_IMOTIF_10003 V2_3_Cs_9786;V2_3_Cs_9787;V2_3_Cs_9788;V2_3_Cs_9789;V2_3_Cs_9790 CCCAGGCTGTGGAGTGGCTTCCCTGCCTTGCCGCCTGCTCCCTGTGCCCTTTTTTTT
V2_IMOTIF_10004 V2_3_Cs_5761;V2_3_Cs_5762;V2_3_Cs_5763;V2_3_Cs_5764;V2_3_Cs_5765 CCCATCCCGGTTCCCTGTGCCCTTTTTTTT
V2_IMOTIF_10005 V2_3_Cs_9526;V2_3_Cs_9527;V2_3_Cs_9528;V2_3_Cs_9529;V2_3_Cs_9530 CCCTGGCCCTAACCCTGTGTGTGCCCTTTTTTTT
V2_IMOTIF_10006 V2_3_Cs_181;V2_3_Cs_182;V2_3_Cs_183;V2_3_Cs_184;V2_3_Cs_185 CCCTGCCCTCCCATTGCCCTTTTTTTT
V2_IMOTIF_10007 V2_3_Cs_6501;V2_3_Cs_6502;V2_3_Cs_6503;V2_3_Cs_6504;V2_3_Cs_6505 CCCTTCAGAGTCACCTGCCCATGGGTCCACCCTTGCCCTTTTTTTT
V2_IMOTIF_10008 V2_3_Cs_9316;V2_3_Cs_9317;V2_3_Cs_9318;V2_3_Cs_9319;V2_3_Cs_9320 CCCGCAGCCCTACCCTTGCCCTTTTTTTT
V2_IMOTIF_10009 V2_3_Cs_5681;V2_3_Cs_5682;V2_3_Cs_5683;V2_3_Cs_5684;V2_3_Cs_5685 CCCAACATGGCGATTCCCACTGTTGTCCTCTTGCCCTTGCCCTTTTTTTT
V2_IMOTIF_1001 V2_4_Cs_10736;V2_4_Cs_10737;V2_4_Cs_10738;V2_4_Cs_10739;V2_4_Cs_10740 CCCCGCCAAAGGCAGTGCAGCCCCGGTTTGGGCCCCTAAACCACCCCTTTTTTTT
V2_IMOTIF_10010 V2_3_Cs_1551;V2_3_Cs_1552;V2_3_Cs_1553;V2_3_Cs_1554;V2_3_Cs_1555 CCCGGACCATCCCTGGTCCCTTGCCCTTTTTTTT
V2_IMOTIF_10011 V2_3_Cs_471;V2_3_Cs_472;V2_3_Cs_473;V2_3_Cs_474;V2_3_Cs_475 CCCTCATGGGCCTCCCTGAGGTCTCACTCCTGTCCCTTGCCCTTTTTTTT
V2_IMOTIF_10012 V2_3_Cs_3066;V2_3_Cs_3067;V2_3_Cs_3068;V2_3_Cs_3069;V2_3_Cs_3070 CCCATTCCCAGGACCCGGGCCTTGCCCTTTTTTTT
V2_IMOTIF_10013 V2_3_Cs_4561;V2_3_Cs_4562;V2_3_Cs_4563;V2_3_Cs_4564;V2_3_Cs_4565 CCCATGTGTGGGAGCCCAGTCTAGTGTTCCCAGCCTCCTTGCCCTTTTTTTT
V2_IMOTIF_10014 V2_3_Cs_4091;V2_3_Cs_4092;V2_3_Cs_4093;V2_3_Cs_4094;V2_3_Cs_4095 CCCTTGTCCCTCTACTTTAAGGCCCTATTCGCTTGCCCTTTTTTTT

Total number of rows: 11816

Table truncated, full table size 1535 Kbytes.




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Supplementary file Size Download File type/resource
GPL33264_221026_NIH_Sri_087164_D_GEO_20221026.txt.gz 519.2 Kb (ftp)(http) TXT

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