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Platform GPL33505 Query DataSets for GPL33505
Status Public on Jun 20, 2024
Title Agilent-085539 Human lncRNA+mRNA array (Probe name version)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Agilent-085539 human_lncRNAmRNA_ExpArray_0507 085538


Arrays of this design have barcodes that begin with 16085539 or 2585539.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Jun 20, 2023
Last update date Jun 20, 2024
Contact name Shishi He
E-mail(s) heshsh5@mail3.sysu.edu.cn
Organization name Sun Yat-sen Memorial Hospital, Sun Yat-sen University
Street address 107 Yanjiang West Road
City Guangzhou
ZIP/Postal code 510120
Country China
 
Samples (26) GSM7498110, GSM7498111, GSM7498112, GSM7498113, GSM7498114, GSM7498115 
Series (2)
GSE235267 lncRNAs differentially expressed in benign and malignant phyllodes tumors [array]
GSE270306 The differential expression of lncRNAs in wnt/β-catenin pathway activation or inactivation of triple-negative breast cancer.

Data table header descriptions
ID Agilent Probe name
SEQUENCE Sequence
CONTROL_TYPE Control type
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description
SPOT_ID Spot identifier

Data table
ID SEQUENCE CONTROL_TYPE CHROMOSOMAL_LOCATION DESCRIPTION SPOT_ID
(+)E1A_r60_1 pos (+)E1A_r60_1
(+)E1A_r60_3 pos (+)E1A_r60_3
(+)E1A_r60_a104 pos (+)E1A_r60_a104
(+)E1A_r60_a107 pos (+)E1A_r60_a107
(+)E1A_r60_a135 pos (+)E1A_r60_a135
(+)E1A_r60_a20 pos (+)E1A_r60_a20
(+)E1A_r60_a22 pos (+)E1A_r60_a22
(+)E1A_r60_a97 pos (+)E1A_r60_a97
(+)E1A_r60_n11 pos (+)E1A_r60_n11
(+)E1A_r60_n9 pos (+)E1A_r60_n9
(-)3xSLv1 neg (-)3xSLv1
A_19_P00315506 CAATGGATTCCATGTTTCTTTTTCTTGGGGGGAGCAGGGAGGGAGAAAGGTAGAAAAATG FALSE chr1:175126856-175126797 Homo sapiens KIAA0040 (KIAA0040), transcript variant 1, mRNA [NM_001162893] A_19_P00315506
A_19_P00315529 CGTGGAGTCCAGCACATCACCCAGAAGGCAGATGTTCTATCTCCATTTTACTCATTAAAA FALSE chr10:6628756-6628815 PRKCQ antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:44689] [ENST00000561822] A_19_P00315529
A_19_P00315668 AAAGGCAATACTAAAGGTATATATTTTTTTCAAAATGCTATTTTTTACTGCACTTGATAA FALSE chr7:139250671-139250612 Homo sapiens homeodomain interacting protein kinase 2 (HIPK2), transcript variant 1, mRNA [NM_022740] A_19_P00315668
A_19_P00315725 AAATTTATATAACCACCATAGTTCAGTATCTCAGGGGTAAAAATAAAATGTGACTATTTA FALSE chr6:107187806-107187747 Q8VGA8_MOUSE (Q8VGA8) Olfactory receptor MOR174-1, partial (5%) [THC2716877] A_19_P00315725
A_19_P00315773 AGGAGCAAAGAGAAAGAAGGCAACCAGCTGGCTACTTTCTTCCCTTCTTGGATGCCTCCA FALSE chr3:107004314-107004373 long intergenic non-protein coding RNA 883 [Source:HGNC Symbol;Acc:HGNC:48569] [ENST00000495228] A_19_P00315773
A_19_P00315780 CATCATCAAATCCCTGTTGCTCAAACCCACTAATTAGCTCATTCTTATCTACAAGTAGCA FALSE chr8:90733518-90733459 A_19_P00315780
A_19_P00315863 GGAATGCCACCACTCCATTCACTCATGTTCCATCCAGCAAATGAAGTATCACGAGCACAC FALSE chr2:216708430-216708371 long intergenic non-protein coding RNA 607 [Source:HGNC Symbol;Acc:HGNC:43944] [ENST00000417922] A_19_P00315863
A_19_P00315922 GGAATCCCAGGATTCAACTACTGCTCTTCAGACGGCGCTGAGCCTCATCTCCATGACCTC FALSE chr10:49984892-49984951 Homo sapiens WDFY family member 4 (WDFY4), mRNA [NM_020945] A_19_P00315922
A_19_P00315936 TCACCAGCTAAGGAGTTGCATTGGCTTCTGCTCTCCTCTCTTGCTCACCTACATTGTGAG FALSE chr3:72283358-72283299 long intergenic non-protein coding RNA 877 [Source:HGNC Symbol;Acc:HGNC:27706] [ENST00000469218] A_19_P00315936

Total number of rows: 172080

Table truncated, full table size 27189 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL33505_085539_D_GEO_20180507.txt.gz 11.2 Mb (ftp)(http) TXT

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