GEO help: Mouse over screen elements for information.
Status
Public on Jun 20, 2024
Title
Agilent-085539 Human lncRNA+mRNA array (Probe name version)
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Homo sapiens
Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
Agilent-085539 human_lncRNAmRNA_ExpArray_0507 085538 Arrays of this design have barcodes that begin with 16085539 or 2585539. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
Submission date
Jun 20, 2023
Last update date
Jun 20, 2024
Contact name
Shishi He
E-mail(s)
heshsh5@mail3.sysu.edu.cn
Organization name
Sun Yat-sen Memorial Hospital, Sun Yat-sen University
Street address
107 Yanjiang West Road
City
Guangzhou
ZIP/Postal code
510120
Country
China
Samples (26)
GSM7498110 , GSM7498111 , GSM7498112 , GSM7498113 , GSM7498114 , GSM7498115
GSM7498116 ,
GSM7498117 ,
GSM7498118 ,
GSM7498119 ,
GSM7498120 ,
GSM7498121 ,
GSM7498122 ,
GSM7498123 ,
GSM7498124 ,
GSM7498125 ,
GSM8339325 ,
GSM8339326 ,
GSM8339327 ,
GSM8339328 ,
GSM8339329 ,
GSM8339330 ,
GSM8339331 ,
GSM8339332 ,
GSM8339333 ,
GSM8339334
Series (2)
GSE235267
lncRNAs differentially expressed in benign and malignant phyllodes tumors [array]
GSE270306
The differential expression of lncRNAs in wnt/β-catenin pathway activation or inactivation of triple-negative breast cancer.
Data table header descriptions
ID
Agilent Probe name
SEQUENCE
Sequence
CONTROL_TYPE
Control type
CHROMOSOMAL_LOCATION
Chromosomal Location
DESCRIPTION
Description
SPOT_ID
Spot identifier
Data table
ID
SEQUENCE
CONTROL_TYPE
CHROMOSOMAL_LOCATION
DESCRIPTION
SPOT_ID
(+)E1A_r60_1
pos
(+)E1A_r60_1
(+)E1A_r60_3
pos
(+)E1A_r60_3
(+)E1A_r60_a104
pos
(+)E1A_r60_a104
(+)E1A_r60_a107
pos
(+)E1A_r60_a107
(+)E1A_r60_a135
pos
(+)E1A_r60_a135
(+)E1A_r60_a20
pos
(+)E1A_r60_a20
(+)E1A_r60_a22
pos
(+)E1A_r60_a22
(+)E1A_r60_a97
pos
(+)E1A_r60_a97
(+)E1A_r60_n11
pos
(+)E1A_r60_n11
(+)E1A_r60_n9
pos
(+)E1A_r60_n9
(-)3xSLv1
neg
(-)3xSLv1
A_19_P00315506
CAATGGATTCCATGTTTCTTTTTCTTGGGGGGAGCAGGGAGGGAGAAAGGTAGAAAAATG
FALSE
chr1:175126856-175126797
Homo sapiens KIAA0040 (KIAA0040), transcript variant 1, mRNA [NM_001162893]
A_19_P00315506
A_19_P00315529
CGTGGAGTCCAGCACATCACCCAGAAGGCAGATGTTCTATCTCCATTTTACTCATTAAAA
FALSE
chr10:6628756-6628815
PRKCQ antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:44689] [ENST00000561822]
A_19_P00315529
A_19_P00315668
AAAGGCAATACTAAAGGTATATATTTTTTTCAAAATGCTATTTTTTACTGCACTTGATAA
FALSE
chr7:139250671-139250612
Homo sapiens homeodomain interacting protein kinase 2 (HIPK2), transcript variant 1, mRNA [NM_022740]
A_19_P00315668
A_19_P00315725
AAATTTATATAACCACCATAGTTCAGTATCTCAGGGGTAAAAATAAAATGTGACTATTTA
FALSE
chr6:107187806-107187747
Q8VGA8_MOUSE (Q8VGA8) Olfactory receptor MOR174-1, partial (5%) [THC2716877]
A_19_P00315725
A_19_P00315773
AGGAGCAAAGAGAAAGAAGGCAACCAGCTGGCTACTTTCTTCCCTTCTTGGATGCCTCCA
FALSE
chr3:107004314-107004373
long intergenic non-protein coding RNA 883 [Source:HGNC Symbol;Acc:HGNC:48569] [ENST00000495228]
A_19_P00315773
A_19_P00315780
CATCATCAAATCCCTGTTGCTCAAACCCACTAATTAGCTCATTCTTATCTACAAGTAGCA
FALSE
chr8:90733518-90733459
A_19_P00315780
A_19_P00315863
GGAATGCCACCACTCCATTCACTCATGTTCCATCCAGCAAATGAAGTATCACGAGCACAC
FALSE
chr2:216708430-216708371
long intergenic non-protein coding RNA 607 [Source:HGNC Symbol;Acc:HGNC:43944] [ENST00000417922]
A_19_P00315863
A_19_P00315922
GGAATCCCAGGATTCAACTACTGCTCTTCAGACGGCGCTGAGCCTCATCTCCATGACCTC
FALSE
chr10:49984892-49984951
Homo sapiens WDFY family member 4 (WDFY4), mRNA [NM_020945]
A_19_P00315922
A_19_P00315936
TCACCAGCTAAGGAGTTGCATTGGCTTCTGCTCTCCTCTCTTGCTCACCTACATTGTGAG
FALSE
chr3:72283358-72283299
long intergenic non-protein coding RNA 877 [Source:HGNC Symbol;Acc:HGNC:27706] [ENST00000469218]
A_19_P00315936
Total number of rows: 172080 Table truncated, full table size 27189 Kbytes .
Supplementary file
Size
Download
File type/resource
GPL33505_085539_D_GEO_20180507.txt.gz
11.2 Mb
(ftp) (http)
TXT