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GEO help: Mouse over screen elements for information. |
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| Status |
Public on May 13, 2024 |
| Title |
RT-PCR Atlantic Salmon |
| Technology type |
RT-PCR |
| Distribution |
virtual |
| Organism |
Salmo salar |
| Manufacturer |
n.a. |
| Manufacture protocol |
see manufacturer's website
|
| |
|
| Description |
PCR assay
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| |
|
| Submission date |
Dec 08, 2023 |
| Last update date |
May 14, 2024 |
| Contact name |
Albert Caballero Solares |
| E-mail(s) |
acaballeroso@mun.ca
|
| Organization name |
Memorial University of Newfoundland
|
| Department |
Ocean Sciences
|
| Street address |
0 Marine Lab Road
|
| City |
St. John's |
| State/province |
NL |
| ZIP/Postal code |
A1C5S7 |
| Country |
Canada |
| |
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| Samples (116)
|
GSM7964074, GSM7964075, GSM7964076, GSM7964077, GSM7964078, GSM7964079
GSM7964080, GSM7964081, GSM7964082, GSM7964083, GSM7964084, GSM7964085, GSM7964086, GSM7964087, GSM7964088, GSM7964089, GSM7964090, GSM7964091, GSM7964092, GSM7964093, GSM7964094, GSM7964095, GSM7964096, GSM7964097, GSM7964098, GSM7964099, GSM7964100, GSM7964101, GSM7964102, GSM7964103, GSM7964104, GSM7964105, GSM7964106, GSM7964107, GSM7964108, GSM7964109, GSM7964110, GSM7964111, GSM7964112, GSM7964113, GSM7964114, GSM7964115, GSM7964116, GSM7964117, GSM7964118, GSM7964119, GSM7964120, GSM7964121, GSM7964122, GSM7964123, GSM7964124, GSM7964125, GSM7964126, GSM7964127, GSM7964128, GSM7964129, GSM7964130, GSM7964131, GSM7964132, GSM7964133, GSM7964134, GSM7964135, GSM7964136, GSM7964137, GSM7964138, GSM7964139, GSM7964140, GSM7964141, GSM7964142, GSM7964143, GSM7964144, GSM7964145, GSM7964146, GSM7964147, GSM7964148, GSM7964149, GSM7964150, GSM7964151, GSM7964152, GSM7964153, GSM7964154, GSM7964155, GSM7964156, GSM7964157, GSM7964158, GSM7964159, GSM7964160, GSM7964161, GSM7964162, GSM7964163, GSM7964164, GSM7964165, GSM7964166, GSM7964167, GSM7964168, GSM7964169, GSM7964170, GSM7964171, GSM7964172, GSM7964173, GSM7964174, GSM7964175, GSM7964176, GSM7964177, GSM7964178, GSM7964179, GSM7964180, GSM7964181, GSM7964182, GSM7964183, GSM7964184, GSM7964185, GSM7964186, GSM7964187, GSM7964188, GSM7964189
|
| Series (1) |
| GSE249779 |
Vegetable omega-3 and omega-6 fatty acids differentially modulate the antiviral and antibacterial immune responses of Atlantic salmon |
|
| Data table header descriptions |
| ID |
|
| Gene name |
Gene name |
| GB_ACC |
|
| Forward primer (5' to 3') |
Forward primer sequence (5' to 3') |
| Reverse primer (5' to 3') |
Reverse primer sequence (5' to 3') |
| Efficiency (%) |
Efficiency (%) |
| Amplicon size (bp) |
Amplicon size (bp) |
| Data table |
| ID |
Gene name |
GB_ACC |
Forward primer (5' to 3') |
Reverse primer (5' to 3') |
Efficiency (%) |
Amplicon size (bp) |
| igd |
Immunoglobulin delta |
AF141606 |
ACCCTAGGAGTTCAACTGGAAA |
AAACCTGCAACAGGAAAATGTA |
106 |
138 |
| camp |
Cathelicidin antimicrobial peptide |
AY360357 |
AGACTGGCAACACCCTCAAC |
TTGCCTCTTCTTGTCCGAAT |
103 |
112 |
| hamp |
Hepcidin |
BT125319 |
ATGAATCTGCCGATGCATTTC |
AATGGCTTTAGTGCTGGCAG |
96 |
134 |
| lyz2 |
Lysozyme C II |
BT047934 |
ATACGGAATGGATGGCTACG |
AGATGCCATAGTCGGTGGAG |
91 |
125 |
| lect2 |
Leukocyte cell-derived chemotaxin-2 |
BT059281 |
CAGATGGGGACAAGGACACT |
GCCTTCTTCGGGTCTGTGTA |
99 |
150 |
| ftm |
Ferritin middle subunit |
BT058199 |
GCAGAATAGTCGGAGGAACTTT |
CTTCGCAATCGTGGTGATAG |
96 |
109 |
| junb |
Transcription factor JunB |
BT044843 |
CCGAGAACTATCGGAACCAA |
GGATGATCAATCGCTCCAGT |
101 |
129 |
| tlr5s |
"Toll-like receptor 5, secreted " |
AY628755 |
ATCGCCCTGCAGATTTTATG |
GAGCCCTCAGCGAGTTAAAG |
96 |
103 |
| cox2 |
Cyclooxygenase-2 |
AY848944 |
ACCTTTGTGCGAAACGCTAT |
GAGTAGGCCTCCCAGCTCTT |
109 |
113 |
| il1b |
Interleukin-1 beta |
AY617117 |
GTATCCCATCACCCCATCAC |
TTGAGCAGGTCCTTGTCCTT |
99 |
119 |
| cxcl8 |
Interleukin-8 |
BT046706 |
GAAAGCAGACGAATTGGTAGAC |
GCTGTTGCTCAGAGTTGCAAT |
104 |
99 |
| fabp4 |
"Fatty acid-binding protein, adipocyte " |
NM_001141203 |
GACTTGGGACGGCAAGACTA |
CAGCAGACTGGAATCACACC |
98 |
128 |
| ctsl |
Cathepsin L1 |
BT057383 |
GTTCAGGAAGACTGGCAAGC |
GGCGTTGTCCTGGATGTACT |
100 |
130 |
| lxra |
Oxysterols receptor LXR-alpha |
GE770391 |
CTCGCCTGTGTTCCTGTTTT |
GAAACGCAAGACCTTCTGCT |
102 |
103 |
| ccl20 |
CC chemokine-like 20 |
EG862627 |
TATCCAGGCATGGTCAGGTT |
ATGTTTTGACCCCTGACCTTTA |
95 |
100 |
| ccl19 |
CC chemokine-like 19 |
BT058161 |
CTGCTTGACAACGACCGATA |
GTTGTTCTTGGTGGCAGGAG |
95 |
151 |
| irf1a |
Interferon regulatory factor 1a |
BT048538 |
GCAATGAAGTAGGCACAGCA |
CGCAGCTCTATTTCCGTTTC |
100 |
100 |
| ifng |
Interferon gamma |
AJ841811 |
CCGTACACCGATTGAGGACT |
GCGGCATTACTCCATCCTAA |
103 |
133 |
| irf1b |
Interferon regulatory factor 1b |
FN806856 |
CGCGTTTACAAAATGCTGAA |
GGTTGCGCTGTAGTCCATTT |
105 |
123 |
| tlr3 |
Toll-like receptor 3 |
BK008646 |
AATATGGCGCTGGTGAAGAG |
CGCAAAGGTGAACACTGAGA |
102 |
135 |
Total number of rows: 48
Table truncated, full table size 4 Kbytes.
| Supplementary data files not provided |
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