GEO help: Mouse over screen elements for information.
Status
Public on Mar 17, 2006
Title
Li UCSF yeast 14062 v1.0
Technology type
spotted DNA/cDNA
Distribution
non-commercial
Organism
Saccharomyces cerevisiae Manufacturer
UCSF Li Lab
Manufacture protocol
PCR products representing ORF and intergenic yeast genomic sequences were amplified. Products were spotted on poly-L-lysine coated glass slides using a linear servo arrayer from the DeRisi Lab at UCSF.
Support
glass
Coating
polysine
Contributor(s)
Morreale RJ , Green BM , Ozaydin B , Derisi JL Submission date
Feb 01, 2006
Last update date
Mar 17, 2006
Contact name
Joachim J Li
E-mail(s)
joachim.li@ucsf.edu Phone
415-476-8782
Fax
415-514-4080
Organization name
University of California, San Francisco
Department
Microbiology and Immunology
Lab
Li
Street address
600 16th Street S376
City
San Francisco
State/province
CA
ZIP/Postal code
94143-2200
Country
USA
Samples (1083)
GSM94891 , GSM95255 , GSM95257 , GSM95258 , GSM95352 , GSM95353
GSM95354 ,
GSM95355 ,
GSM95356 ,
GSM95357 ,
GSM95358 ,
GSM95359 ,
GSM95360 ,
GSM95361 ,
GSM95362 ,
GSM95363 ,
GSM95364 ,
GSM95365 ,
GSM95366 ,
GSM95367 ,
GSM95368 ,
GSM95369 ,
GSM95370 ,
GSM95371 ,
GSM95372 ,
GSM95373 ,
GSM95374 ,
GSM95375 ,
GSM95376 ,
GSM95377 ,
GSM95378 ,
GSM95379 ,
GSM95380 ,
GSM95381 ,
GSM95382 ,
GSM95383 ,
GSM95384 ,
GSM95385 ,
GSM95387 ,
GSM95388 ,
GSM95389 ,
GSM95390 ,
GSM95391 ,
GSM95392 ,
GSM95393 ,
GSM95394 ,
GSM95399 ,
GSM95400 ,
GSM95401 ,
GSM95402 ,
GSM547350 ,
GSM547351 ,
GSM547352 ,
GSM547353 ,
GSM547354 ,
GSM547355 ,
GSM547356 ,
GSM547357 ,
GSM547358 ,
GSM547359 ,
GSM547360 ,
GSM547361 ,
GSM547362 ,
GSM547363 ,
GSM547364 ,
GSM547365 ,
GSM547366 ,
GSM547367 ,
GSM547368 ,
GSM547369 ,
GSM547370 ,
GSM547371 ,
GSM547372 ,
GSM547373 ,
GSM547374 ,
GSM547375 ,
GSM547376 ,
GSM547377 ,
GSM547378 ,
GSM547379 ,
GSM547380 ,
GSM547381 ,
GSM547382 ,
GSM547383 ,
GSM547384 ,
GSM547385 ,
GSM547386 ,
GSM547387 ,
GSM547388 ,
GSM547389 ,
GSM547390 ,
GSM547391 ,
GSM547392 ,
GSM547393 ,
GSM547394 ,
GSM547395 ,
GSM547396 ,
GSM547397 ,
GSM547398 ,
GSM547399 ,
GSM547400 ,
GSM547401 ,
GSM547402 ,
GSM547403 ,
GSM547404 ,
GSM547405 ,
GSM547406 ,
GSM547407 ,
GSM547408 ,
GSM547409 ,
GSM547410 ,
GSM547411 ,
GSM547412 ,
GSM547413 ,
GSM547414 ,
GSM547415 ,
GSM547416 ,
GSM547417 ,
GSM547418 ,
GSM547419 ,
GSM547420 ,
GSM547421 ,
GSM547422 ,
GSM547423 ,
GSM547424 ,
GSM547425 ,
GSM547426 ,
GSM547427 ,
GSM547428 ,
GSM547429 ,
GSM547430 ,
GSM547431 ,
GSM547432 ,
GSM547433 ,
GSM547434 ,
GSM547435 ,
GSM547436 ,
GSM547437 ,
GSM547438 ,
GSM547439 ,
GSM547440 ,
GSM547441 ,
GSM547442 ,
GSM547443 ,
GSM547444 ,
GSM547445 ,
GSM547446 ,
GSM547447 ,
GSM547448 ,
GSM547449 ,
GSM547450 ,
GSM547451 ,
GSM547452 ,
GSM547453 ,
GSM547454 ,
GSM547455 ,
GSM547456 ,
GSM547457 ,
GSM547458 ,
GSM547459 ,
GSM547460 ,
GSM547461 ,
GSM547462 ,
GSM547463 ,
GSM547464 ,
GSM547465 ,
GSM547466 ,
GSM547467 ,
GSM547468 ,
GSM547469 ,
GSM547470 ,
GSM547471 ,
GSM547472 ,
GSM547473 ,
GSM547474 ,
GSM547475 ,
GSM547476 ,
GSM547477 ,
GSM547478 ,
GSM547479 ,
GSM547480 ,
GSM547481 ,
GSM547482 ,
GSM547483 ,
GSM547484 ,
GSM547485 ,
GSM547486 ,
GSM547487 ,
GSM547488 ,
GSM547489 ,
GSM547490 ,
GSM547491 ,
GSM547492 ,
GSM547493 ,
GSM547494 ,
GSM547495 ,
GSM547496 ,
GSM547497 ,
GSM547498 ,
GSM547499 ,
GSM547500 ,
GSM547501 ,
GSM547502 ,
GSM547503 ,
GSM547504 ,
GSM547505 ,
GSM547506 ,
GSM547507 ,
GSM547508 ,
GSM547509 ,
GSM547510 ,
GSM547511 ,
GSM547512 ,
GSM547513 ,
GSM547514 ,
GSM547515 ,
GSM547516 ,
GSM547517 ,
GSM547518 ,
GSM547519 ,
GSM547520 ,
GSM547521 ,
GSM547522 ,
GSM547523 ,
GSM547524 ,
GSM547525 ,
GSM547526 ,
GSM547527 ,
GSM547528 ,
GSM547529 ,
GSM547530 ,
GSM547531 ,
GSM547532 ,
GSM547533 ,
GSM547534 ,
GSM547535 ,
GSM547536 ,
GSM547537 ,
GSM547538 ,
GSM547539 ,
GSM547540 ,
GSM547541 ,
GSM547542 ,
GSM547543 ,
GSM547544 ,
GSM547545 ,
GSM547546 ,
GSM547547 ,
GSM547548 ,
GSM547549 ,
GSM547550 ,
GSM547551 ,
GSM547552 ,
GSM1011131 ,
GSM1011132 ,
GSM1011133 ,
GSM1011134 ,
GSM1011135 ,
GSM1011136 ,
GSM1011137 ,
GSM1011138 ,
GSM1011139 ,
GSM1011140 ,
GSM1011141 ,
GSM1011142 ,
GSM1011143 ,
GSM1011144 ,
GSM1011145 ,
GSM1011146 ,
GSM1011147 ,
GSM1011148 ,
GSM1011149 ,
GSM1011150 ,
GSM1011151 ,
GSM1011152 ,
GSM1011153 ,
GSM1011154 ,
GSM1011155 ,
GSM1011156 ,
GSM1011157 ,
GSM1011158 ,
GSM1011159 ,
GSM1011160 ,
GSM1011161 ,
GSM1011162 ,
GSM1011163 ,
GSM1011164 ,
GSM1011165 ,
GSM1011166 ,
GSM1011167 ,
GSM1011168 ,
GSM1011169 ,
GSM1011170 ,
GSM1011171 ,
GSM1011172 ,
GSM1011173 ,
GSM1011174 ,
GSM1011175 ,
GSM1011176 ,
GSM1011177 ,
GSM1011178 ,
GSM1011179 ,
GSM1011180 ,
GSM1011181 ,
GSM1011182 ,
GSM1011183 ,
GSM1011184 ,
GSM1011185 ,
GSM1011186 ,
GSM1011187 ,
GSM1011188 ,
GSM1011189 ,
GSM1011190 ,
GSM1011191 ,
GSM1011192 ,
GSM1011193 ,
GSM1011194 ,
GSM1011195 ,
GSM1011196 ,
GSM1011197 ,
GSM1011198 ,
GSM1011199 ,
GSM1011200 ,
GSM1011201 ,
GSM1011202 ,
GSM1011203 ,
GSM1011204 ,
GSM1011205 ,
GSM1011206 ,
GSM1011207 ,
GSM1011208 ,
GSM1011209 ,
GSM1011210 ,
GSM1011211 ,
GSM1011212 ,
GSM1011213 ,
GSM1011214 ,
GSM1011215 ,
GSM1011216 ,
GSM1011217 ,
GSM1011218 ,
GSM1011219 ,
GSM1011220 ,
GSM1011221 ,
GSM1011222 ,
GSM1011223 ,
GSM1011224 ,
GSM1011225 ,
GSM1011226 ,
GSM1011227 ,
GSM1011228 ,
GSM1011229 ,
GSM1011230 ,
GSM1011231 ,
GSM1011232 ,
GSM1011233 ,
GSM1011234 ,
GSM1011235 ,
GSM1011236 ,
GSM1011237 ,
GSM1011238 ,
GSM1011239 ,
GSM1011240 ,
GSM1011241 ,
GSM1011242 ,
GSM1011243 ,
GSM1011244 ,
GSM1011245 ,
GSM1011246 ,
GSM1011247 ,
GSM1011248 ,
GSM1011249 ,
GSM1011250 ,
GSM1011251 ,
GSM1011252 ,
GSM1011253 ,
GSM1011254 ,
GSM1011255 ,
GSM1011256 ,
GSM1011257 ,
GSM1011258 ,
GSM1011259 ,
GSM1011260 ,
GSM1011261 ,
GSM1011262 ,
GSM1011263 ,
GSM1011264 ,
GSM1011265 ,
GSM1011266 ,
GSM1011267 ,
GSM1011268 ,
GSM1011269 ,
GSM1011270 ,
GSM1011271 ,
GSM1011272 ,
GSM1011273 ,
GSM1011274 ,
GSM1011275 ,
GSM1011276 ,
GSM1011277 ,
GSM1011278 ,
GSM1011279 ,
GSM1011280 ,
GSM1011281 ,
GSM1011282 ,
GSM1011283 ,
GSM1011284 ,
GSM1011285 ,
GSM1011286 ,
GSM1011287 ,
GSM1011288 ,
GSM1011289 ,
GSM1011290 ,
GSM1011291 ,
GSM1011292 ,
GSM1011293 ,
GSM1011294 ,
GSM1011295 ,
GSM1011296 ,
GSM1011297 ,
GSM1011298 ,
GSM1011299 ,
GSM1011300 ,
GSM1011301 ,
GSM1011302 ,
GSM1011303 ,
GSM1011304 ,
GSM1011305 ,
GSM1011306 ,
GSM1011307 ,
GSM1011308 ,
GSM1011309 ,
GSM1011310 ,
GSM1011311 ,
GSM1011312 ,
GSM1011313 ,
GSM1011314 ,
GSM1011315 ,
GSM1011316 ,
GSM1011317 ,
GSM1011318 ,
GSM1011319 ,
GSM1011320 ,
GSM1011321 ,
GSM1011322 ,
GSM1011323 ,
GSM1011324 ,
GSM1011325 ,
GSM1011326 ,
GSM1011327 ,
GSM1011328 ,
GSM1011329 ,
GSM1011330 ,
GSM1011331 ,
GSM1011332 ,
GSM1011333 ,
GSM1011334 ,
GSM1011335 ,
GSM1011336 ,
GSM1011337 ,
GSM1011338 ,
GSM1011339 ,
GSM1011340 ,
GSM1011341 ,
GSM1011342 ,
GSM1011343 ,
GSM1011344 ,
GSM1011345 ,
GSM1011346 ,
GSM1011347 ,
GSM1011348 ,
GSM1011349 ,
GSM1011350 ,
GSM1011351 ,
GSM1011352 ,
GSM1011353 ,
GSM1011354 ,
GSM1011355 ,
GSM1011356 ,
GSM1011357 ,
GSM1011358 ,
GSM1011359 ,
GSM1011360 ,
GSM1011361 ,
GSM1011362 ,
GSM1011363 ,
GSM1011364 ,
GSM1011365 ,
GSM1011366 ,
GSM1011367 ,
GSM1011368 ,
GSM1011369 ,
GSM1011370 ,
GSM1011371 ,
GSM1011372 ,
GSM1011373 ,
GSM1011374 ,
GSM1011375 ,
GSM1011376 ,
GSM1011377 ...
Accession list truncated, click here to browse through all related public accessions You can also download a list of all accessions here Series (6)
GSE4181 Genome-wide mapping of DNA re-replication in S. cerevisiae
GSE22018 Loss of DNA replication control is a potent initiator of gene amplification
GSE41259 Single-Stranded Annealing Induced by Re-Initiation of Replication Origins Provides a Novel and Efficient Mechanism for Generating Copy Number Expansion via Non-Allelic Homologous Recombination.
GSE55420 Regulatory Mechanisms That Prevent Re-initiation of DNA Replication Can Be Locally Modulated at Origins by Nearby Sequence Elements
GSE55641 Re-replication generates whole-chromosomal instability and anueploidy
GSE124382 DNA re-replication is susceptible to nucleotide level mutagenesis
Data table header descriptions ID Flag 0: Good, element included in analysis, -1: Bad, oligos do not generate a single unique PCR product, -2: Bad, sequence of PCR product too repetitive
Name SGD name of ORF
ORF SGD Gene
SPOT_ID Chromosome Chromosome of element (1-16, Mito)
Start Starting chromosomal position of element (bp from left end)
End Ending chromosomal position of element (bp from left end)
SEQUENCE Sequence of PCR product on the array
Data table ID Flag Name ORF SPOT_ID Chromosome Start End SEQUENCE 15S_rRNA_2
0
15S_rRNA_2
Mito
6546
8194
15S_rRNA1
0
15S_rRNA1
Mito
6591
7255
15S_rRNA2
0
15S_rRNA2
Mito
7373
8177
21S_rRNA_3
0
21S_rRNA_3
Mito
58009
60724
21S_rRNA_4
0
21S_rRNA_4
Mito
61868
62447
21S_rRNA0
0
21S_rRNA0
Mito
61932
62585
21S_rRNA1
0
21S_rRNA1
Mito
58042
59319
21S_rRNA2
0
21S_rRNA2
Mito
59350
60703
9S_rRNA
0
9S_rRNA
Mito
85311
85778
9S_rRNA_5
0
9S_rRNA_5
Mito
85290
85779
CEN1
0
CEN1 1
151438
151605
CTTTTATGTAATGATTTAAGTCTTGTCACATGACATAATAATAAATAATTTTAAAAATATAAAATATTTTTAATAGTTTTTAAATATTTTACAGTTTATTTTTTAAATTTATTTATATGTTTTTGTTTTCCGAAGCAGTCAAAGTATTTTAATTTTCGGAGCTTTCAT
CEN10
0
CEN10 10
436002
436126
GTTCGGAAATCATAAACATTGTTTTTTTGTGTTTTTTATTTTTAAATAAAAAGAATAAATATTTTATATTAAAAAATAAATTTTAAAGTAAATTAATTATTTAACACGTGATTAAGTTACTCTAA
CEN11
0
CEN11 11
439775
439889
TTCGGAAATCATGAACATTTATTTTTATGATTATGTAATTAAAAAAATATAATAAATTTATTTTGAAAATTAATTTTTTTAAAATTTTAAATATGTTTTTATCATGTGACTTATG
CEN12
0
CEN12 12
150832
150958
TTGTTCGGATAACAAATACAATAGTGTTATTAAAAAATAAAACTTATTTAAAAATAGTAATTTAAATTATTATTTTATTTTAATAAACTTTTTAATAATATTTATTACACGTGATTTAATATATCCT
CEN13
0
CEN13 13
268020
268135
CGTGACAAAAAATCACATGACTACCTAACAAAATATTTATTTTTCTTTTTTAATATTTGAAAATACTAAAATATTTTTGTTGTTTTTTGAAAAAAGGATTTTTAATGTGTATGCGT
CEN14
0
CEN14 14
628747
628878
TCTAGTTAGTCACGTGCAGCTTTTTAAAAATATTTTAAAACATTTTAAAAAATATACATTTTTTTATTATTTTTTTATATATTAATGTTAAAATTTATTTATGTATTTGTCTTCCGAAAAGTAAAATAACGT
CEN15
0
CEN15 15
326592
326699
TTCGGAAGTCATATACATTAAATAATTAAAACATTATTTTTAAAAATTAAAAAAATATATTTTAGCAAATAGTTTTTACTTTTTTTTAAATGCAAAATAAGTTCACGT
CEN16
0
CEN16 16
555940
556056
GATCACAAATAGATCACATGATATATTTTTTATTTTTAATTTTTTTTAATTATAAAAATAATTTTTTTCTTTAAATTAAACAAAAATAAAAAATTGTTTTTTGTTGGTTAAGATTTC
CEN2
0
CEN2 2
238154
238298
ATTGATCCTACATAAATCATGTGACTTATTTATTTAATTATTATTAAGTAAAAAAGATTTTCTATTTAAATTTATTAATTAATTTTTTTTCTTAAATAATTATTTTATGTTTTTGTTTTCCGAAAAAGAAAAATATTTCAACAAG
CEN3
0
CEN3 3
113972
114099
AATAGTACAAATAAGTCACATGATGATATTTGATTTTATTATATTTTTAAAAAAAGTAAAAAATAAAAAGTAGTTTATTTTTAAAAAATAAAATTTAAAATATTAGTGTATTTGATTTCCGAAAGTTA
14062 12050 Kbytes .Supplementary data files not provided
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