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Platform GPL3493 Query DataSets for GPL3493
Status Public on Feb 27, 2007
Title NIA Mouse 15K cDNA array_Hepatotoxicity
Technology type spotted DNA/cDNA
Distribution non-commercial
Organism Mus musculus
Manufacturer University Health Network
Manufacture protocol The mouse 15k bacterial clone sets from NIA were PCR amplified and purified before spotting on CMT-GAP II slides (Corning). Post Printing Quality Control tests include a real hybridization using commercially available mouse RNA, vector probe labeling and terminal transferase tailing method to assess spot morphology, background quality and intensity of signal. More information is available on http://www.microarrays.ca
Duplicate adjacent spots on the array.
Catalog number None
Support glass
Coating aminosilane
 
 
Web link http://www.microarrays.ca
Contributor(s) Rath SK, Noel S
Submission date Feb 27, 2006
Last update date Jan 18, 2013
Contact name Sanjeev Noel
E-mail(s) sanjeevnoel@gmail.com
Phone 91-9935392997
Organization name Central Drug Research Institute
Department Toxicology
Lab Genotoxicity
Street address M G Marg
City Lucknow
State/province Uttar Pradesh
ZIP/Postal code 226001
Country India
 
Samples (17) GSM99080, GSM106990, GSM109587, GSM109588, GSM109589, GSM109591 
Series (2)
GSE4874 Carbon tetrachloride and Acetaminophen hepatotoxicity study
GSE5979 Differential gene expression in mice liver following primaquine administration

Data table header descriptions
ID
CLONE_ID Clone ID from National Institute of Aging
UGCluster Unigene Cluster ID
Name Gene Name
Symbol Gene Symbol
LLID Locus Link ID
UGRepAcc Unigene Representative Protein Accession
LLRepProtAcc Entrez Gene Representative Protein Accession
Chromosome Chromosome Number
Cytoband Chromosomal Location

Data table
ID CLONE_ID UGCluster Name Symbol LLID UGRepAcc LLRepProtAcc Chromosome Cytoband
1 H3007F01 Mm.203 "Apurinic/apyrimidinic endonuclease 1 (Apex1), mRNA" Apex1 11792 AK144251 NP_033817 14
2 H3007D07 Mm.103522 "PWP2 (periodic tryptophan protein) homolog, yeast, mRNA (cDNA clone IMAGE:3991539)" Pwp2h 110816 AK088983 NP_083822 10
3 H3007D01 Mm.5068 "SH3 domain protein 4, mRNA (cDNA clone MGC:31726 IMAGE:4920799)" Sh3d4 20410 AB190911 NP_035496 14
4 H3007B07 Mm.23987 "Toll-interleukin 1 receptor (TIR) domain-containing adaptor protein (Tirap), mRNA" Tirap 117149 AK081514 NP_473437 9 9 A5.3
5 H3007B01 Mm.23837 "Leucine rich repeat containing 5, mRNA (cDNA clone MGC:47330 IMAGE:4239389)" Lrrc5 231549 AK170452 NP_848816 5 5 E5
6 H3003H07 Data not found
7 H3003H01 Mm.288206 "Adenylate cyclase 7 (Adcy7), mRNA" Adcy7 11513 AK138911 NP_031432 8
8 H3003F07 Mm.285993 "Calmodulin 1 (Calm1), mRNA" Calm1 12313 BC054805 NP_033920 12
9 H3003F01 Data not found
10 H3003D07 In multiple clusters
11 H3003D01 Data not found
12 H3003B07 Mm.27443 "Methyl-CpG binding domain protein 6 (Mbd6), mRNA" D10Wsu93e 110962 NM_033072 NP_149063 10
13 H3003B01 Mm.273418 "Melanoma associated antigen (mutated) 1, mRNA (cDNA clone IMAGE:5369109)" Mum1 68114 AK147490 NP_075920 10 10 C1
14 H3015B07 Mm.46029 "G patch domain containing 4, mRNA (cDNA clone MGC:28443 IMAGE:4039649)" Gpatc4 66614 BC080676 NP_079939 3 3 F1
15 H3015B01 Mm.4325 "Kruppel-like factor 4 (gut), mRNA (cDNA clone MGC:11479 IMAGE:3156339)" Klf4 16600 AK155343 NP_034767 4
16 H3011H07 Mm.379341 "Archain 1, mRNA (cDNA clone MGC:36506 IMAGE:5368060)" Arcn1 213827 AK028556 NP_666097 9 9 A5.2
17 H3011H01 Mm.321828 "Luc7 homolog (S. cerevisiae)-like, mRNA (cDNA clone MGC:32167 IMAGE:5003664)" Luc7l 66978 AK133196 NP_082466 17
18 H3011F07 Mm.193688 "Protein tyrosine phosphatase 4a2 (Ptp4a2), mRNA" Ptp4a2 19244 AK155895 NP_033000 4 4 D2.3
19 H3011F01 Mm.248353 "Host cell factor C1 (Hcfc1), mRNA" Hcfc1 15161 BC053742 NP_032250 X
20 H3011D07 Mm.28688 "Seryl-aminoacyl-tRNA synthetase 1, mRNA (cDNA clone MGC:7162 IMAGE:3257101)" Sars1 20226 AK028358 NP_035449 3

Total number of rows: 15247

Table truncated, full table size 1570 Kbytes.




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Supplementary file Size Download File type/resource
GPL3493_complete_layout.txt.gz 442.4 Kb (ftp)(http) TXT

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