 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Sep 01, 2006 |
| Title |
Pseudomonas syringae pv. tomato str. DC3000 5.6K array |
| Technology type |
in situ oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
Pseudomonas syringae pv. tomato str. DC3000 |
| Manufacturer |
Nimblegen |
| Manufacture protocol |
as described in Nimblegen Labs manual
|
| |
|
| |
|
| Contributor(s) |
Lan L, Tang X |
| Submission date |
Feb 27, 2006 |
| Last update date |
Sep 01, 2006 |
| Contact name |
Xiaoyan Tang |
| E-mail(s) |
xtang@ksu.edu, llan@ksu.edu
|
| Phone |
785-532-2334
|
| Fax |
785-532-5692
|
| Organization name |
Kansas State University
|
| Department |
Plant Pathology
|
| Lab |
xiaoyan
|
| Street address |
4702 Throckmorton
|
| City |
manhattan |
| State/province |
KS |
| ZIP/Postal code |
66502 |
| Country |
USA |
| |
|
| Samples (23)
|
GSM109003, GSM109007, GSM109009, GSM109011, GSM109012, GSM109014
GSM109015, GSM109016, GSM109017, GSM109018, GSM109019, GSM142283, GSM142287, GSM142289, GSM374658, GSM374659, GSM374660, GSM374661, GSM374662, GSM374663, GSM374664, GSM374665, GSM374666
|
| Series (3) |
| GSE4848 |
Expression profiles of hrpRS- and hrpL- mutants |
| GSE6121 |
lonB mutant |
| GSE15032 |
The expression profiles of PSPTO_2222 and PSPTO_2222-2223 mutants in MM or KB |
|
| Data table header descriptions |
| ID |
|
| Synonym |
The PSPTO number of DC3000 ORFs |
| ORF |
Locus tag |
| Putative function |
The putative function |
| Role categories |
The Pseudomonas syringae DC3000 genes have been categorized by cellular role and subrole (adapted from Monica Riley (1993) Microbiol. Rev.) |
| Data table |
| ID |
Synonym |
ORF |
Putative function |
Role categories |
| 1 |
PSPTO0001 |
PSPTO0001 |
chromosomal replication initiator protein DnaA |
DNA metabolism |
| 2 |
PSPTO0002 |
PSPTO0002 |
DNA polymerase III, beta subunit |
DNA metabolism |
| 3 |
PSPTO0003 |
PSPTO0003 |
DNA replication and repair protein RecF |
DNA metabolism |
| 4 |
PSPTO0004 |
PSPTO0004 |
DNA gyrase, subunit B |
DNA metabolism |
| 5 |
PSPTO0005 |
PSPTO0005 |
type I restriction-modification system, M subunit, putative |
DNA metabolism |
| 6 |
PSPTO0006 |
PSPTO0006 |
type I restriction-modification system, S subunit, EcoA family |
DNA metabolism |
| 7 |
PSPTO0007 |
PSPTO0007 |
hypothetical protein |
hypothetical protein |
| 8 |
PSPTO0008 |
PSPTO0008 |
type I site-specific deoxyribonuclease, HsdR family |
DNA metabolism |
| 9 |
PSPTO0009 |
PSPTO0009 |
ISPsy3, transposase |
Mobile and extrachromosomal element functions |
| 10 |
PSPTO0011 |
PSPTO0011 |
conserved hypothetical protein |
Hypothetical Proteins - Conserved |
| 11 |
PSPTO0012 |
PSPTO0012 |
hypothetical protein |
hypothetical protein |
| 12 |
PSPTO0013 |
PSPTO0013 |
hypothetical protein |
hypothetical protein |
| 13 |
PSPTO0014 |
PSPTO0014 |
hypothetical protein |
hypothetical protein |
| 14 |
PSPTO0015 |
PSPTO0015 |
hypothetical protein |
hypothetical protein |
| 15 |
PSPTO0016 |
PSPTO0016 |
hypothetical protein |
hypothetical protein |
| 16 |
PSPTO0017 |
PSPTO0017 |
helicase/SNF2 family domain protein |
Unknown function |
| 17 |
PSPTO0018 |
PSPTO0018 |
ISPsy4, transposition helper protein |
Mobile and extrachromosomal element functions |
| 18 |
PSPTO0019 |
PSPTO0019 |
ISPsy4, transposase |
Mobile and extrachromosomal element functions |
| 19 |
PSPTO0020 |
PSPTO0020 |
hypothetical protein |
hypothetical protein |
| 20 |
PSPTO0021 |
PSPTO0021 |
hypothetical protein |
hypothetical protein |
Total number of rows: 5608
Table truncated, full table size 453 Kbytes.
| Supplementary data files not provided |
|
|
|
|
 |
Less...
More...