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Platform GPL34967 Query DataSets for GPL34967
Status Public on Oct 04, 2024
Title Agilent-025384 Xq28_2009 [Feature Number version]
Technology type in situ oligonucleotide
Distribution commercial
Organism Homo sapiens
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16025384 or 2525384.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Oct 04, 2024
Last update date Oct 04, 2024
Contact name GEO admin
E-mail(s) geo@ncbi.nlm.nih.gov
Organization name NCBI/NLM/NIH
Street address 9000 Rockville Pike
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Samples (1) GSM8555570
Series (1)
GSE256075 Structural variant allelic heterogeneity in MECP2 Duplication Syndrome provides insight into clinical severity and variability of disease expression

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GB_ACC GenBankAccession
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description
Sequence

Data table
ID COL ROW SPOT_ID CONTROL_TYPE GB_ACC GENE_SYMBOL GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION Sequence
1 266 170 HsCGHBrightCorner pos
2 266 168 DarkCorner pos
3 266 166 DarkCorner pos
4 266 164 DarkCorner pos
5 266 162 DarkCorner pos
6 266 160 DarkCorner pos
7 266 158 DarkCorner pos
8 266 156 DarkCorner pos
9 266 154 DarkCorner pos
10 266 152 DarkCorner pos
11 266 150 DarkCorner pos
12 266 148 A_16_P21659044 FALSE ens|ENST00000407338 chrY:12884680-12884726 hs|q11.21 CAGTTTGCATACCTGATCAGATCGGGTATCTTCCCGTCAAGAACACG
13 266 146 A_18_P27239505 FALSE ens|ENST00000403224 chrY:8280065-8280124 hs|p11.2 TCATACTATAGAGAAGTTTGCAAATGTTATAAGTGTGGAAAAGTCTTTAACAAGTTCTCA
14 266 144 A_18_P17355874 FALSE CR933607 gb|CR933607 chrX:150047936-150047995 hs|q28 Homo sapiens mRNA; cDNA DKFZp686M17113 (from clone DKFZp686M17113). CCTTTCAGTGATTAGAGTATATGCCACCCTTTTTGATCTCTTGATATATTTAGTATCTGG
15 266 142 A_16_P03799551 FALSE chrY:8592452-8592507 hs|p11.2 ATCTTTCACTGACATCAAACTCCGGTTCTCAGATATGGTTTTATCACCCAAAGAAC
16 266 140 A_16_P03794400 FALSE NM_007150 ZNF185 zinc finger protein 185 (LIM domain) ref|NM_007150 chrX:151857908-151857965 hs|q28 Homo sapiens zinc finger protein 185 (LIM domain) (ZNF185), mRNA. TGTCTCATACGGTTCTCCTCACAGTCTCTCAAAGGTTTATGCCTAATTACAACAAAAC
17 266 138 A_16_P60444534 FALSE chrY:15935188-15935239 hs|q11.221 CTTTCCACCATGTTAAAATACACCAAGAAGTCACCATCCGTGAACCAGAAAG
18 266 136 CUST_592_PI419119334 FALSE chrY:000000001-002710000 chrY:000671684-000671743 ACGTGGTGACACGGGGTCCACATCTCATTGAATTGCGGGATGACGTGGAAATTAATGTGA
19 266 134 A_16_P03805097 FALSE chrY:17239618-17239677 hs|q11.221 AACTGGATCTAGTTAAATAATTCTTTTTCTTTTCACTACAATATTTCCAAGATTAATTTT
20 266 132 A_16_P18052387 FALSE NM_005045 RELN reelin ref|NM_005045|ref|NM_173054 chr7:103369464-103369523 hs|q22.1 Homo sapiens reelin (RELN), transcript variant 1, mRNA. AAAAGTTACAAAAGAGGCTATGAGTAAACTGGTAACATTATCAGACTGTTTCAGGGATCC

Total number of rows: 45220

Table truncated, full table size 8360 Kbytes.




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