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Platform GPL3508 Query DataSets for GPL3508
Status Public on Mar 09, 2006
Title ENCODE NimbleGen hg16 tiling array
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer NimbleGen Inc.
Manufacture protocol tiling array; see NimbleGen website. Note that one 50 mer every 38 nts. Repeats are not included in array.
 
 
Contributor(s) Bieda MC, Xu S, Farnham P, Singer M, Green R
Submission date Mar 03, 2006
Last update date Apr 11, 2006
Contact name Mark Bieda
E-mail(s) markb7002000@yahoo.com
Organization name University of Calgary
Department Biochemistry and Molecular Biology
Lab Bieda
Street address 3330 Hospital Dr NW
City Calgary
State/province AB
ZIP/Postal code T2N4N1
Country Canada
 
Samples (8) GSM98963, GSM98964, GSM98965, GSM98966, GSM98967, GSM98968 
Series (4)
GSE4337 POLII localization in HeLa cells
GSE4338 IgG control ChIP in HeLa cells
GSE4355 E2F1 binding sites in MCF7 cells ENCODE

Data table header descriptions
ID
GENOME_ACC GenBank chromosome identifier (hg16)
RANGE_START chromosome start point of oligo
RANGE_END chromosome end point of oligo
RANGE_STRAND always plus
ENCODE_REGION ENCODE region name (ENCODE Consortium Defined)
CHROMOSOME chromosome number
PROBE_ID_FORXREF field for coding similar to hg17 array data
GB_RANGE Accession.version[start..end]

Data table
ID GENOME_ACC RANGE_START RANGE_END RANGE_STRAND ENCODE_REGION CHROMOSOME PROBE_ID_FORXREF GB_RANGE
ENm000P0000000001 NC_000007.10 115365024 115365073 + ENm001 chr7 chr7_115365024 NC_000007.10[115365024..115365073]
ENm000P0000000002 NC_000007.10 115365062 115365111 + ENm001 chr7 chr7_115365062 NC_000007.10[115365062..115365111]
ENm000P0000000003 NC_000007.10 115365100 115365149 + ENm001 chr7 chr7_115365100 NC_000007.10[115365100..115365149]
ENm000P0000000004 NC_000007.10 115365138 115365187 + ENm001 chr7 chr7_115365138 NC_000007.10[115365138..115365187]
ENm000P0000000005 NC_000007.10 115365176 115365225 + ENm001 chr7 chr7_115365176 NC_000007.10[115365176..115365225]
ENm000P0000000006 NC_000007.10 115365214 115365263 + ENm001 chr7 chr7_115365214 NC_000007.10[115365214..115365263]
ENm000P0000000007 NC_000007.10 115365252 115365301 + ENm001 chr7 chr7_115365252 NC_000007.10[115365252..115365301]
ENm000P0000000008 NC_000007.10 115365290 115365339 + ENm001 chr7 chr7_115365290 NC_000007.10[115365290..115365339]
ENm000P0000000009 NC_000007.10 115365328 115365377 + ENm001 chr7 chr7_115365328 NC_000007.10[115365328..115365377]
ENm000P0000000010 NC_000007.10 115365366 115365415 + ENm001 chr7 chr7_115365366 NC_000007.10[115365366..115365415]
ENm000P0000000011 NC_000007.10 115365404 115365453 + ENm001 chr7 chr7_115365404 NC_000007.10[115365404..115365453]
ENm000P0000000012 NC_000007.10 115365442 115365491 + ENm001 chr7 chr7_115365442 NC_000007.10[115365442..115365491]
ENm000P0000000013 NC_000007.10 115365480 115365529 + ENm001 chr7 chr7_115365480 NC_000007.10[115365480..115365529]
ENm000P0000000014 NC_000007.10 115365518 115365567 + ENm001 chr7 chr7_115365518 NC_000007.10[115365518..115365567]
ENm000P0000000015 NC_000007.10 115365556 115365605 + ENm001 chr7 chr7_115365556 NC_000007.10[115365556..115365605]
ENm000P0000000016 NC_000007.10 115365594 115365643 + ENm001 chr7 chr7_115365594 NC_000007.10[115365594..115365643]
ENm000P0000000017 NC_000007.10 115365632 115365681 + ENm001 chr7 chr7_115365632 NC_000007.10[115365632..115365681]
ENm000P0000000018 NC_000007.10 115365670 115365719 + ENm001 chr7 chr7_115365670 NC_000007.10[115365670..115365719]
ENm000P0000000019 NC_000007.10 115365708 115365757 + ENm001 chr7 chr7_115365708 NC_000007.10[115365708..115365757]
ENm000P0000000020 NC_000007.10 115365746 115365795 + ENm001 chr7 chr7_115365746 NC_000007.10[115365746..115365795]

Total number of rows: 382884

Table truncated, full table size 41641 Kbytes.




Download family Format
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Supplementary data files not provided
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