NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL3592 Query DataSets for GPL3592
Status Public on Mar 28, 2006
Title Eurogentec S. pombe ORF array (D040E)
Technology type spotted DNA/cDNA
Distribution custom-commercial
Organism Schizosaccharomyces pombe
Manufacturer Eurogentec AG
Manufacture protocol Primary PCR: The PCR reactions are performed using tagged genome specific primers in the presence of genomic DNA (provided by your laboratory). We normally achieve a success rate of 93 % of PCR reactions. For the failed PCR reactions we perform three different protocols of PCR conditions, which include different MgCl2 concentrations and different Taq polymerase. We should normally get an additional 2 % working and reach a success rate of 95 % in total. We check 5 % of the total oligos by Mass Spectrometry and will re-synthesize maximum 2 % of the oligos based on a newly designed primer. We will perform the PCR reactions with the new designed oligonucleotides with the standard PCR protocol. Following this process we reach usually 97 % success rate.
Support glass
Coating unknown
 
Description 11520 ORFs were spotted in duplicate on glass slide
 
Submission date Mar 25, 2006
Last update date Jan 18, 2013
Contact name Claes M Gustafsson
E-mail(s) claes.gustafsson@medkem.gu.se
Organization name Gothenburg University
Department Department of Medical biochemistry and cell biology
Street address Medcinaregatan 9A
City Gothenburg
ZIP/Postal code 405 30
Country Sweden
 
Samples (4) GSM102843, GSM102848, GSM102850, GSM102851
Series (1)
GSE3213 Genome-wide occupancy profile of mediator and the srb8-11 module reveals interactions with coding regions.

Data table header descriptions
ID
Block Spot position in the block
Column Spot position in the column
Row Spot position in the row
ORF Entrez Gene identifier
SPOT_ID identifier for spots without ORF
Name Name of nucleotide fragment

Data table
ID Block Column Row ORF SPOT_ID Name
1 1 1 1 Luciferase Luciferase
2 1 2 1 Luciferase Luciferase
3 1 3 1 Ef1-b Ef1-b
4 1 4 1 Ef1-b Ef1-b
5 1 5 1 Buffer Buffer
6 1 6 1 Buffer Buffer
7 1 7 1 --Empty Empty
8 1 8 1 --Empty Empty
9 1 9 1 --Empty Empty
10 1 10 1 --Empty Empty
11 1 11 1 --Empty Empty
12 1 12 1 --Empty Empty
13 1 13 1 --Empty Empty
14 1 14 1 --Empty Empty
15 1 15 1 --Empty Empty
16 1 16 1 --Empty Empty
17 1 17 1 --Empty Empty
18 1 18 1 --Empty Empty
19 1 1 2 fkbp39 fkbp39
20 1 2 2 fkbp39 fkbp39

Total number of rows: 11520

Table truncated, full table size 384 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap