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Platform GPL3644 Query DataSets for GPL3644
Status Public on Apr 13, 2006
Title WTSI Xenopus tropicalis 2.5K array v2.1.1
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Xenopus tropicalis
Manufacturer WTSI Microarray facility
Manufacture protocol Spotted 5prime amino linked 65mers (Illumina) @50nM with a BioRobotics MicroGrid II Pro onto GE Healthcare Codelink slides according to manufacturer's instuctions.
Support glass
Coating other
 
Description GE Healthcare Codelink
 
Contributor(s) Clark MD, Caccamo M, Stemple DL
Submission date Apr 10, 2006
Last update date Apr 13, 2006
Contact name Matthew Clark
E-mail(s) mc3@sanger.ac.uk
Organization name Wellcome Trust Sanger Institute
Department Vertebrate Geneitcs and Development
Street address Wellcome Trust Genome Campus
City Hinxton
ZIP/Postal code CB10 1SA
Country United Kingdom
 

Data table header descriptions
ID
SEQUENCE 65mer sequence or control feature
GB_ACC GenBank Accession number
SPOT_ID Transcript IDs from Ensembl; controls

Data table
ID SEQUENCE GB_ACC SPOT_ID
AB037686|3_PRIME_500_BASES_414 CCGAATATAGTTCTCAAACCTCTGTATCGGGAATCAGTGAAGAGCTCCACCAATATAATTCTCAG AB037686
AB037688|3_PRIME_500_BASES_420 GTAATAATGTTTATAATGCAAAGAAAATCTATGTATTAGAGACTTTCTTTTTGACTATATTTTGT AB037688
AB048259|3_PRIME_500_BASES_16 TCTCCAGACGAGGGATGCATGTGCCTACTTTTCGAGTGCAGGATTACAGCTGGGAAGATCACGGC AB048259
AF033110|3_PRIME_500_BASES_1 TTCTGTTTGTGTTTAGCCGAATCCTCAGCCATTTCTCCCCTTCACATCCATGGGTGACCCCCCTA AF033110
AF035446|3_PRIME_500_BASES_193 AAGGCCAAGATAGAAGGCAGAATGACGATCGGAGAGAATACGCATACAGGCCAGCAAGCTGTTCC AF035446
AF045798|3_PRIME_500_BASES_259 GGTTATGTCCAGACAGAACCACCCCAAACCCCTCTCGCTTCCCAGAAAGTCCCACAACTGCAATC AF045798
AF067856|3_PRIME_500_BASES_295 GGAAGGGTTTAATTTCGGTGAAACTGACCTTAAACTACAGAACTTGCCATCTGAAAGTTTTTATC AF067856
AF108809_1 ACCAGGTCGCGTGTGTATGTGAGGCGCTGCAGCAGGGAGGCAACTTGGAGAGACTGGGCAGATTC AF108809
AF108810|3_PRIME_500_BASES_113 TGTCCTCAAGGCCAAGGCCGTGGTCGCCTTCCACAGGGGCAATTTCAGGGAACTCTATAAGATCC AF108810
AF175342_355 ATTTGAGCCATTGGACGCACGGCCATTGCATGATTCCTTTGTTTCTGGGGACAGACCCCCCTAAA AF175342
AF179300|3_PRIME_500_BASES_105 TCTGCTTTCCTTACTGACGTTCCTCAGCTGTAATAGGCTGCTTTTACCTCTGCCGCAAGCCTCTT AF179300
AF179301|3_PRIME_500_BASES_5 GGCAGAAACCTCTCGACCCACCAAGGATATTCTGCTTTATCTGAATTCACAGCCTTCTCCATTAA AF179301
AF255340|3_PRIME_500_BASES_358 TAGCGGCTCAACTGAAATGACCCGATTGGCTGCTTTTAATACAAATACTAATAACTGAATTTGAG AF255340
AF297713|3_PRIME_500_BASES_228 AAGGGCCTTTTTTCTTGGTTTGTTTTGGATGTGTAATAATCTAAAAAGTAGAGTTGAAACTTAAG AF297713
AF314056|3_PRIME_500_BASES_324 ATCGACTATGATGATAGCGGAGGTGTATGCTAAAGTGATGTTGCAATATGTCCAAGAACACACAA AF314056
AF314148|3_PRIME_500_BASES_431 TTGATATCGAAGCAGGACAGAAGCCTACAGAGCAACATGAATGGCCCACGAAAGCACAGGGAGGA AF314148
AF325324|3_PRIME_500_BASES_210 CGTTTGAGATCCTGTGTCCTTCCAATCTTTGCTCTAATATGTTTCCCACCTGGCCATAAGTAGCC AF325324
AL644805|3_PRIME_500_BASES_404 TCAGGACAAACTCACAGATCACATGGAAGATGGTGTTAAGCACCAAGACGAAGGTATGTACAAAG AL644805
AY154394|3_PRIME_500_BASES_315 GCCATCCAAGGATTGAGGCACTCCTCTACGGTGATGACACCATTTGTATGACACATGAATACAAA AY154394
AY166869|3_PRIME_500_BASES_407 CTTTCTTCAACATCTTCCTGAACTGTAACAGTAATCAGCCACTGTATTTCTCTGCAGAGATATTT AY166869

Total number of rows: 2471

Table truncated, full table size 270 Kbytes.




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