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Platform GPL3699 Query DataSets for GPL3699
Status Public on Apr 25, 2006
Title RAKEv2
Technology type spotted oligonucleotide
Distribution non-commercial
Organisms Arabidopsis thaliana; Homo sapiens; Mus musculus; Rattus norvegicus
Manufacturer Penn Microarray Facility
Manufacture protocol contact printing on CodeLink glass slides
Support glass
Coating other
 
Description Printed glass slide microarray for RNA-primed Array-based Klenow Enzyme assay for detection of microRNAs
 
Web link http://www.med.upenn.edu/microarr
Contributor(s) Baldwin DA
Submission date Apr 24, 2006
Last update date Feb 12, 2008
Contact name Don Baldwin
E-mail(s) dbaldwin@mail.med.upenn.edu
Phone 215-898-3675
Fax 215-898-4227
URL http://www.med.upenn.edu/microarr
Organization name University of Pennsylvania
Department Pathology and Lab Medicine
Lab Penn Microarray Facility
Street address 277 John Morgan, 3620 Hamilton Walk
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Samples (3) GSM106584, GSM106585, GSM106586
Series (1)
GSE4723 Comparison of miRNA expression in Dickkopf1-expressing versus control newborn mouse skin

Data table header descriptions
ID
Block array print block
Column block column
Row block row
Oligo_name oligomer probe name
miRNA_target targeted mature microRNA
ORGANISM genus species
Comment comment
Sense_target_sequence sequence of targeted miRNA
SEQUENCE sequence of probe
array version oligo design set
SPOT_ID spot identifier

Data table
ID Block Column Row Oligo_name miRNA_target ORGANISM Comment Sense_target_sequence SEQUENCE array version SPOT_ID
10101 1 1 1 Cy3 control Cy3 control landing light 2 --Cy3 control_landing light
10102 1 1 2 ath-miR165 ath-miR165 Arabidopsis thaliana ucggaccaggcuucauccccc GTCGTGACTGGGAATAGCCTGTTTgggggatgaagcctggtccga 1 ath-miR165
10103 1 1 3 ath-miR165 ath-miR165 Arabidopsis thaliana ucggaccaggcuucauccccc GTCGTGACTGGGAATAGCCTGTTTgggggatgaagcctggtccga 1 ath-miR165
10104 1 1 4 hsa-miR-128ash hsa-miR-128ash Homo sapiens ucacagugaaccggucucuu GTCGTGACTGGGAATAGCCTGTTTaagagaccggttcactgtga 2 hsa-miR-128ash
10105 1 1 5 pred00373 pred00373 Homo sapiens predicted GTCGTGACTGGGAATAGCCTGTTTproprietary 2 pred00373
10106 1 1 6 Cy3 control Cy3 control landing light 2 --Cy3 control_landing light
10201 1 2 1 Cy3 control Cy3 control landing light 2 --Cy3 control_landing light
10202 1 2 2 ath-miR165 ath-miR165 Arabidopsis thaliana ucggaccaggcuucauccccc GTCGTGACTGGGAATAGCCTGTTTgggggatgaagcctggtccga 1 ath-miR165
10203 1 2 3 ath-miR165 ath-miR165 Arabidopsis thaliana ucggaccaggcuucauccccc GTCGTGACTGGGAATAGCCTGTTTgggggatgaagcctggtccga 1 ath-miR165
10204 1 2 4 hsa-miR-128ash hsa-miR-128ash Homo sapiens ucacagugaaccggucucuu GTCGTGACTGGGAATAGCCTGTTTaagagaccggttcactgtga 2 hsa-miR-128ash
10205 1 2 5 pred00373 pred00373 Homo sapiens predicted GTCGTGACTGGGAATAGCCTGTTTproprietary 2 pred00373
10206 1 2 6 Cy3 control Cy3 control landing light 2 --Cy3 control_landing light
10301 1 3 1 Cy3 control Cy3 control landing light 2 --Cy3 control_landing light
10302 1 3 2 miR-106a miR-106a multiple CAAAGUGCUAACAGUGCAGGUA GTCGTGACTGGGAATAGCCTGTTTTACCTGCACTGTTAGCACTTTG 1 miR-106a
10303 1 3 3 miR-106a miR-106a multiple CAAAGUGCUAACAGUGCAGGUA GTCGTGACTGGGAATAGCCTGTTTTACCTGCACTGTTAGCACTTTG 1 miR-106a
10304 1 3 4 pred00013 pred00013 Homo sapiens predicted GTCGTGACTGGGAATAGCCTGTTTproprietary 2 pred00013
10305 1 3 5 pred00397 pred00397 Homo sapiens predicted GTCGTGACTGGGAATAGCCTGTTTproprietary 2 pred00397
10306 1 3 6 Cy3 control Cy3 control landing light 2 --Cy3 control_landing light
10401 1 4 1 Cy3 control Cy3 control landing light 2 --Cy3 control_landing light
10402 1 4 2 miR-106a miR-106a multiple CAAAGUGCUAACAGUGCAGGUA GTCGTGACTGGGAATAGCCTGTTTTACCTGCACTGTTAGCACTTTG 1 miR-106a

Total number of rows: 4608

Table truncated, full table size 421 Kbytes.




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