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Platform GPL3721 Query DataSets for GPL3721
Status Public on Jan 01, 2007
Title Zebrafish Oligonucleotide Array (Compugen)
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Danio rerio
Manufacturer Compugen
Manufacture protocol For each gene one 65-mer oligonucleotide probe was designed from the 3' region of the sequence. Each probe was selected from a sequence segment that is common to a maximum number of splice-variants predicted for each gene.
Catalog number N/A
Support glass
Coating unknown
 
Description The Compugen set of zebrafish oligonucleotides was designed by Compugen based on ESTs, mostly from the Washington University Zebrafish Genome Assemblies. Compugen no longer sell or support this product. Sequences are not for commercial use, copyright reserved to Compugen 2002.
 
Contributor(s) Rohrschneider MR, Prince VE
Citation(s) 16132083
Submission date May 02, 2006
Last update date Jan 01, 2007
Contact name Victoria Emma Prince
E-mail(s) vprince@uchicago.edu
Fax 773 702 0037
Organization name University of Chicago
Department Organismal Biology & Anatomy
Street address 1027 E 57th St
City Chicago
State/province IL
ZIP/Postal code 60615
Country USA
 
Samples (15) GSM116361, GSM116362, GSM116363, GSM116364, GSM116365, GSM116366 
Series (2)
GSE5199 Identification of downstream targets of zebrafish Hoxb1a
GSE9260 Inflammation and degeneration of the olfactory epithelium in an immuno-deficient zebrafish

Data table header descriptions
ID
GB_ACC EST/gene accession number
WZ Washington University Zebrafish Genome Resources EST assemblies
SEQUENCE 65-mer oligonucleotide

Data table
ID GB_ACC WZ SEQUENCE
1 AF210643 wz18637 CTTATTGTCACTGCGGCTCTGTGTTTCGCCATGCGCATTCCTCTAGAGTTTACACTTGCGGAGGG
2 AF297658 wz18466 TTCAGCATTCCTCCGCTACGGACATCCCGTTCAAACACTACACTGCCGAAATCCGACGGAAACCT
3 AF246189 wz37740 TGATCAACATCTGCATCTGCATCTGGACTCTGACTCTCTGCATTCAGGAGAGTTGGGGACAAGTG
4 AF246193 wz18518 CACTGGATCAACAGTAAAGCTGTGTACACATTCGGTGGAGGAACCAAACTGCTGATCTCAACTGG
5 AF006831 wz18190 AACTATTGAACAGGAGAGACAAGGAGAGTCCACACCGTGAATGACGTCTGTAACACAGCAGAAAG
6 AF137538 wz15066 TGTGGCCAAACATGACGGAGGAACACGACGAGCCTCTGCTGCACTCAATGTCATTGGTGTTGCAG
7 AF068773 wz2628 AAGATATGCCCGTTCTGGAGGGAGACGACGACACTTCGAGAATGGAGGAAGTCGACTAAAGAGTT
8 AB055678 wz37769 ATTAGTTCTGCTTCCTAGAAGAGTAGAGATGGGAACTGGATGGTGGGTGGAGGAGCCAAGGACTA
9 AF007949 wz13994 TAAATGCATGACCGAGACGATCTTGGTCCCACTCCAGGAATTAAAGGGAGCTTCTTTACCATCAA
10 X85977 wz1093 ACTCTGGTAAGAAGCGCAAAAGGAGGGTGCTCTTTTCCAAGGCACAAACTTACGAACTCGAGCGC
11 X60095 wz10954 GTTAACTTGGAAGAGTTCAATAGGCAAGCTCGCTCTGAACCAGATTACATGATATCAGCTAGTAC
12 AF030281 wz9043 TAGGTCTAGGCTTGTCTAGATATGCTTGTATATGGTATCGCAATTACGCCACTCTCTTTCCTGCA
13 X97330 wz18381 TACTCGGAAGCGCATGCGCAGAGCTATGCTGACGGATATTCAAGATGCATTGAGGAAACGGCGCG
14 AF071252 wz18137 TTCTGGAGTGTAGAACGTGGATTTTACCCGCGTTGTGTCTCCCTACTCTCCCCTGCACATTAGAA
15 AJ306432 wz18143 GCTGAAGACGAACCACGGACGAGATTCTGACGAGGACACTTCGAGTGGAGGCTCGCGAACTAATT
16 AF030282 wz17986 TAGGCCAATGACCCTATTGGGTCTATTGCGATTGGTTGACTTGGTTCAGTGCGAGACAGAGAGAA
17 AB043787 wz1182 AAGCCGGATGAAGCAGTAAAGCCAGGCGCGTTAGCTTTCTCTGAGCAGTTGAGGCGAAGTGCCAT
18 AF229449 wz7700 GTGTGTGTTCGCCTCCTTGAAGACCCACAATCCCTTCCCTTACCAGTCCTCCTGTTGCTGATCAT
19 AF184244 wz7586 AGCCTGATATTGTTGCTACGTGCCATATGTGGTCGGACGCCTCATTCGCCAGATGCTGGATTTAA
20 AF031375 wz17958 TGGACAGTCTCTATCCCAGGTTTGCTTGGTGTTTTATGAGGACGACACTCCTGTAGATAGTTCAT

Total number of rows: 16399

Table truncated, full table size 1401 Kbytes.






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Supplementary data files not provided
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