GEO help: Mouse over screen elements for information.
Status
Public on Jul 03, 2006
Title
Su(Ste) tiling and microRNA array (#2)
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Drosophila melanogaster Manufacturer
LC Sciences (Houston, TX, USA)
Manufacture protocol
MicroRNA probes were designed by LC Sciences (based on Sanger Institute miRBase repository sequences on September 7, 2005). LNA-modified RNA probes were synthesized in situ using photogenerated acid coupled with conventional DMT chemistry (LNA-modification ensures Tm-normalization). Synthesis was performed on a µParaflo microfluidic chip.http://www.lcsciences.com for additionnal details.
Catalog number
LC_050380
Contributor(s)
Vagin VV , Sigova A , Li C , Seitz H , Gvozdev V , Zamore PD Submission date
May 24, 2006
Last update date
Jul 03, 2006
Contact name
Hervé Seitz
Phone
(508)856 1220
Fax
(508)856 2003
URL
http://www.umassmed.edu/bmp/faculty/zamore.cfm?start=0& Organization name
University of Massachusetts Medical School
Department
Biochemistry and Molecular Pharmacology
Lab
870 P, Lazare Research Building
Street address
364 Plantation Street
City
Worcester
State/province
MA
ZIP/Postal code
01605-2324
Country
USA
Samples (1)
GSM110589 Series (1)
GSE4932 A small RNA mechanism distinct from the RNAi and microRNA pathways silences selfish genetic elements in Drosophila.
Data table header descriptions ID Probe_ID Name of the detected RNA
SEQUENCE Sequence of the detected RNA
Row Position on array (row)
Column Position on array (column)
Position Position on array (single-cell format)
SPOT_ID
Data table ID Probe_ID SEQUENCE Row Column Position SPOT_ID 1
5S
CCGCUUGGGAACACCGCGUGUUG
1
1
1-1:1
2
ANTICG4027 1
GCCAACCGUGAGAAGAUGACCC
1
2
1-1:2
3
ANTICG4027 129
UUGAGCACGGUAUCGUGACCAA
1
3
1-1:3
4
ANTISu(Ste 249
CGGAAAAUCGAAGGAAAACCUG
1
4
1-1:4
5
ANTISu(Ste 377
UACUGGCAACUUCGUAUUUUAA
1
5
1-1:5
6
ANTISu(Ste 505
AAAUAUACAAAUUCUUGUUUAA
1
6
1-1:6
7
ANTISu(Ste 633
AAUAAUAAUAUUAAUCAAUAAA
1
7
1-1:7
8
ANTISu(Ste 761
UACUAAUACACCUCAUACACCU
1
8
1-1:8
9
ANTISu(Ste 889
CUCCGGCAUUCCGAAGUCAAGC
1
9
1-1:9
10
5S
CCGCUUGGGAACACCGCGUGUUG
1
10
1-1:10
11
ANTISu(Ste 1017
UUGUUUUCUAACCAAAGCGCUU
1
11
1-1:11
12
ANTISu(Ste 1145
UUCCAUCCUAAAACUGAUACAC
1
12
1-1:12
13
ANTISu(Ste 1273
AUAUGAGAGGAGACUUUGAAUC
1
13
1-1:13
14
ANTISu(Ste 1401
CGUGAUCCUGAAGCCGGUGUUC
1
14
1-1:14
15
ANTISu(Ste 1529
CAACAACAGCAGCUGGAUCAAU
1
15
1-1:15
16
ANTImiR-12 6
GCCGUGCACGGAUCGCACUAAC
1
16
1-1:16
17
ANTImiR-12 134
CAAUAGGAACCCAUUGCCGCGA
1
17
1-1:17
18
miR-12 65
UGAUGUAAUACUCAACCGUACA
1
18
1-1:18
19
CG4027-PB( 53
GUUGGUCACGAUACCGUGCUCA
1
19
1-1:19
20
Su(Ste) 1
UUCACUCGUUCACAGAAAUAUG
1
20
1-1:20
3968 224 Kbytes .Supplementary data files not provided
