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Platform GPL3844 Query DataSets for GPL3844
Status Public on Jun 09, 2006
Title [Sugar_Cane] Affymetrix Sugar Cane Genome Array
Technology type in situ oligonucleotide
Distribution commercial
Organism Saccharum officinarum
Manufacturer Affymetrix
Manufacture protocol see manufacturer's web site
 
Description Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html

The GeneChip Sugar Cane Genome Array contains 8,236 S. officinarum probe sets to monitor gene expression for approximately 6,024 distinct S. officinarum genes (including both UniGene and non-UniGene gene clusters).
The sequence information for this array was created in collaboration with leading sugar cane researchers through the GeneChip® Consortia Program and was designed based on content from Saccharum officinarum UniGene Build 5 from August 27th, 2004 and GenBank® mRNAs up to November 2, 2004. The array contains 11 probe pairs per probe set and is a 169-format, 11-micron array design.
 
Web link http://www.affymetrix.com/support/technical/byproduct.affx?product=sugarcane
http://www.affymetrix.com/analysis/index.affx
Submission date Jun 06, 2006
Last update date Jun 03, 2009
Organization Affymetrix, Inc.
E-mail(s) geo@ncbi.nlm.nih.gov, support@affymetrix.com
Phone 888-362-2447
URL http://www.affymetrix.com/index.affx
Street address
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (29) GSM113349, GSM113350, GSM113351, GSM113352, GSM113353, GSM113354 
Series (3)
GSE5021 Transcripts associated with cell wall metabolism and development in the sugarcane stem by GeneChip expression profiling
GSE11934 Differential expression of genes in the leaves of sugarcane in response to sugar accumulation
GSE67897 Expression profiling of tissues within the sugarcane maturing stalk

Data table header descriptions
ID Affymetrix Probe Set ID
Species Scientific Name The genus and species of the organism represented by the probe set.
Annotation Date The date that the annotations for this probe array were last updated. It will generally be earlier than the date when the annotations were posted on the Affymetrix web site.
GB_ACC GenBank Accession Number
UniGene ID
Gene Title Title of Gene represented by the probe set.
SPOT_ID

Data table
ID Species Scientific Name Annotation Date GB_ACC UniGene ID Gene Title SPOT_ID
AFFX-BioB-3_at Saccharum officinarum 11-Apr-06 --- --- -- CONTROL
AFFX-BioB-5_at Saccharum officinarum 11-Apr-06 --- --- -- CONTROL
AFFX-BioB-M_at Saccharum officinarum 11-Apr-06 --- --- -- CONTROL
AFFX-BioC-3_at Saccharum officinarum 11-Apr-06 --- --- -- CONTROL
AFFX-BioC-5_at Saccharum officinarum 11-Apr-06 --- --- -- CONTROL
AFFX-BioDn-3_at Saccharum officinarum 11-Apr-06 --- --- -- CONTROL
AFFX-BioDn-5_at Saccharum officinarum 11-Apr-06 --- --- -- CONTROL
AFFX-CreX-3_at Saccharum officinarum 11-Apr-06 --- --- -- CONTROL
AFFX-CreX-5_at Saccharum officinarum 11-Apr-06 --- --- -- CONTROL
AFFX-DapX-3_at Saccharum officinarum 11-Apr-06 --- --- -- CONTROL
AFFX-DapX-5_at Saccharum officinarum 11-Apr-06 --- --- -- CONTROL
AFFX-DapX-M_at Saccharum officinarum 11-Apr-06 --- --- -- CONTROL
AFFX-LysX-3_at Saccharum officinarum 11-Apr-06 --- --- -- CONTROL
AFFX-LysX-5_at Saccharum officinarum 11-Apr-06 --- --- -- CONTROL
AFFX-LysX-M_at Saccharum officinarum 11-Apr-06 --- --- -- CONTROL
AFFX-PheX-3_at Saccharum officinarum 11-Apr-06 --- --- -- CONTROL
AFFX-PheX-5_at Saccharum officinarum 11-Apr-06 --- --- -- CONTROL
AFFX-PheX-M_at Saccharum officinarum 11-Apr-06 --- --- -- CONTROL
AFFX-r2-Bs-dap-3_at Saccharum officinarum 11-Apr-06 --- --- -- CONTROL
AFFX-r2-Bs-dap-5_at Saccharum officinarum 11-Apr-06 --- --- -- CONTROL

Total number of rows: 8387

Table truncated, full table size 1023 Kbytes.






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