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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jun 22, 2006 |
| Title |
Whole Genome, Alternative Splicing Drosophila Chip v2 |
| Technology type |
spotted oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
Drosophila melanogaster |
| Manufacturer |
Agilent Technologies |
| Manufacture protocol |
Oligonucleotide probes were designed using
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| Contributor(s) |
McIntyre LM |
| Submission date |
Jun 19, 2006 |
| Last update date |
Jan 18, 2013 |
| Contact name |
Lauren M. McIntyre |
| E-mail(s) |
mcintyre@ufl.edu
|
| Phone |
(352) 273-8024
|
| Organization name |
University of Florida
|
| Department |
Dept. of Molecular Genetics and Microbiology
|
| Street address |
PO Box 100266; R2-293
|
| City |
Gainesville |
| State/province |
FL |
| ZIP/Postal code |
32610-0266 |
| Country |
USA |
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| Samples (58)
|
GSM115925, GSM115926, GSM115927, GSM115928, GSM115929, GSM115930
GSM115931, GSM115932, GSM115933, GSM115934, GSM115935, GSM115936, GSM115937, GSM115938, GSM115939, GSM115940, GSM115941, GSM115942, GSM115943, GSM115944, GSM115945, GSM115946, GSM115947, GSM115948, GSM116333, GSM116334, GSM116335, GSM116336, GSM116337, GSM116338, GSM116339, GSM116340, GSM116341, GSM116342, GSM116343, GSM116344, GSM116345, GSM116346, GSM116347, GSM116348, GSM116349, GSM116350, GSM116351, GSM116352, GSM116353, GSM116354, GSM116355, GSM116356, GSM116805, GSM116806, GSM116807, GSM116808, GSM116809, GSM116810, GSM116811, GSM116812, GSM116813, GSM116814
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| Series (4)
|
| GSE5182 |
Determining the wash solution to use |
| GSE5183 |
Determining the number of individuals to pool |
| GSE5189 |
Expression data from adult male and female Drosophila melanogaster antenna, proboscis, and front leg |
| GSE5190 |
Sex-, stage-, and tissue-specific alternative splicing in Drosophila melanogaster |
|
| Data table header descriptions |
| ID |
unique id for every spot |
| SEQUENCE |
|
| Probeuid |
|
| CG |
|
| Full_Name |
|
| Synonyms |
|
| Gene |
|
| Cellular_Component |
|
| Biological_Processes |
|
| Molecular_Functions |
|
| Flybase |
|
| Protein_Domains |
|
| Control_type |
|
| SPOT_ID |
|
| Data table |
| ID |
SEQUENCE |
Probeuid |
CG |
Full_Name |
Synonyms |
Gene |
Cellular_Component |
Biological_Processes |
Molecular_Functions |
Flybase |
Protein_Domains |
Control_type |
SPOT_ID |
| 1 |
|
0 |
|
|
|
|
|
|
|
|
|
1 |
-- NO INFORMATION |
| 2 |
|
1 |
|
|
|
|
|
|
|
|
|
-1 |
-- NO INFORMATION |
| 3 |
TGCCGGAGGGCTATCGTTTCCGTGGCCAGATTTTCGATACGGTTAACAGTCTGCTGCGTT |
6609 |
CG12225-RA |
|
dSpt6 - s |
Spt6 |
nuclear exosome (RNase complex) - polytene chromosome |
chromatin assembly/disassembly - RNA elongation - RNA elongation from Pol II promoter - transcription initiation from Pol II promoter |
chromatin binding - general RNA polymerase II transcription factor activity - transcriptional elongation regulator activity |
FBgn0028 |
IPR000980 == Src homology 2 (SH2) domain IPR003029 == S1 RNA binding domain |
0 |
|
| 4 |
AGCAAACTGAGTTTCCTGTGGGTGAAACCCAGCGATTTTCAAATTAAAGACCTGACCGCA |
12827 |
CG4573-RA |
|
CG4573 |
CG457 |
|
tRNA aminoacylation for protein translation |
glutamate-tRNA ligase activity |
FBgn0036 |
|
0 |
|
| 5 |
AACTTCGATCTGGAGATCCGGAAGGAAAAGTGTGAGATTGAGTTCGGCGTGTATGGAATA |
15703 |
CG3050-RB CG3050-RA |
|
6d5 - Cyp |
Cyp6d |
membrane - microsome |
steroid metabolism |
electron transporter activity - oxidoreductase activity |
FBan0003 |
IPR001128 == Cytochrome P450 enzyme IPR002401 == E-class P450 group I IPR002402 == E-class P450 group II IPR002403 == |
0 |
|
| 6 |
|
5 |
|
|
|
|
|
|
|
|
|
1 |
-- NO INFORMATION |
| 7 |
|
6 |
|
|
|
|
|
|
|
|
|
1 |
-- NO INFORMATION |
| 8 |
CATCTCCGGGGCGTGCGTATTATCCCTCGTATATGGGACAACCTTATATGGGACAACCGT |
2073 |
CG14119-RA |
|
CG14119 |
CG141 |
|
|
|
FBgn0036 |
|
0 |
|
| 9 |
ATGGCGAATAAGTGCCGCTGCGGTGCAGAGGTCCTGGGCGGAGAAAACAGAGGTGTTTTC |
3883 |
CG6262-RB CG6262-RE CG6262-RA |
|
CG6262 |
CG626 |
|
disaccharide metabolism |
hydrolase activity hydrolyzing N-glycosyl compounds |
FBgn0034 |
|
0 |
|
| 10 |
TATGCCCTAGGAGAAGGAAGTCAAGAAGGCCTGCACGCCGCAAAAAATGTGGAATTGAAA |
2358 |
|
|
|
|
|
|
|
|
|
0 |
|
| 11 |
AGCACCCATCATTATTTCTATCCAATTCAAAGACCCATGTGTGTTGTGCTGGTTCCAGCT |
14970 |
CG11009-RA |
|
CG11009 |
CG110 |
|
|
|
FBgn0036 |
|
0 |
|
| 12 |
AAACTATACAAATGCCCACTGACTCGATTTTGCAAGGCCTAAGCCATTCATCAACAAACA |
9652 |
CG15556-RA |
|
CG15556 |
CG155 |
integral to membrane |
G-protein coupled receptor protein signaling pathway |
G-protein coupled receptor activity |
FBgn0039 |
|
0 |
|
| 13 |
GGCATCGAGCTGGATGACAACTATCGGGACGAGGACATCTTCGAGCTGCAGCACCATCAT |
3407 |
CG9262-RA |
Shaker cognate l |
Shl - Sh- |
Shal |
integral to membrane - plasma membrane - voltage-gated potassium channel comple |
potassium ion transport |
voltage-gated potassium channel activity |
FBgn0003 |
IPR000210 == BTB/POZ domain IPR000636 == Cation channels (non-ligand gated) IPR001622 == Potassium channel IPR003091 |
0 |
|
| 14 |
|
6 |
|
|
|
|
|
|
|
|
|
1 |
-- NO INFORMATION |
| 15 |
CACCTGATTCAGGGCGGCTTGGCCACAGAGAACGTGGTCTTTCACCTAAAAGTTAACGAG |
6028 |
CG4122-RB CG4122-RG CG4122-RD CG4122-RA CG32818-RA |
silver |
CPD - dwp |
svr |
|
cuticle biosynthesis (sensu Insecta) - proteolysis and peptidolysis |
metallocarboxypeptidase activity - metallocarboxypeptidase D activity |
FBgn0052 |
IPR000834 == Zinc carboxypeptidases carboxypeptidase A metalloprotease (M14) family |
0 |
|
| 16 |
CAGCAGGGCGGTTTTGGACAAGGATTCGGTGGTTTCGGTTCCTTTGGACAGCAGCAACAG |
10678 |
CG4440-RA |
|
CG4440 - |
CG444 |
|
|
|
FBgn0047 |
|
0 |
|
| 17 |
CGAGAAAAAGGCCAGGAAGATCATGCTGAAGCTGGGACTTAAGCAGATCCAGGGCGTCAA |
1202 |
CG8759-RB CG8759-RA CG8759-RC |
Nascent polypeptide associated |
&agr;NAC |
Nacal |
nascent polypeptide-associated complex |
|
|
CG8759 - |
IPR003037 == TS-N domain |
0 |
|
| 18 |
CGTCGGCCTGTATTAGTTCGTTCTCCGCTCTGGATGGGTATCCATTCGACCTGCTGCACA |
3377 |
CG5441-RA |
|
Delilah - |
dei |
nucleus |
mesoderm development - muscle attachment - somatic muscle development |
specific RNA polymerase II transcription factor activity - transcription factor activity |
FBgn0008 |
|
0 |
|
| 19 |
GGAGGCCATTCAGTCACCCGTTTCTGGTTCTGGAGGAGATCAAGCGGAGCAGACGGGTGA |
2440 |
CG1630-RA CG1630-RB |
|
DIP3K2 - |
IP3K2 |
|
|
inositol-trisphosphate 3-kinase activity |
FBgn0030 |
|
0 |
|
| 20 |
GGCTTCATGCTCGTCCACGCAAATGGAAACATTTGTGGAGCAACTGATGGCATTGATAAA |
6346 |
CG16723-RA |
|
CG16723 |
CG167 |
|
|
|
FBgn0039 |
|
0 |
|
Total number of rows: 22575
Table truncated, full table size 4301 Kbytes.
| Supplementary data files not provided |
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