GEO help: Mouse over screen elements for information.
Status
Public on Jun 23, 2006
Title
CCDTM Hs_CCDTM17.5k
Technology type
spotted DNA/cDNA
Distribution
non-commercial
Organism
Homo sapiens Manufacturer
NIH Clinical Center, Dept. of Transfusion Medicine, Immunogenetics Section (NIH/CC/DTM)
Manufacture protocol
Microarrays are printed with GeneMachines robotic arrayer from Genomic Solutions (http://www.genomicsolutions.com ) that is fitted with a printhead containing 32 SMP2.5 printing pins from Telechem International (http://www.arrayit.com ). The human cDNA probe set is based on RG_HsKG_031901 8k clone set and 9k clones from the RG_Hs_seq_ver_070700 40k clone set from Research Genetics (http://clones.invitrogen.com ). The set includes 12,072 uniquely named genes, 875 duplicates of named genes and all remainder consisted of expression sequence tags (about 4053 EST). The cDNA probes were amplified by PCR and distributed into 384-well polypropylene plates (Genetix, 384 micro array) and dissolved in 3XSSC print buffer at a concentration of 50-100 ug/ml. The microarray spot densities are 280 microns (center-to-center), and one spot is printed per probe per slide. The microarrays are printed on Fisher Premium microscope slides (cat# 12-544-1) coated with poly-L-lysine and post-processed according to the procedures on the NCI website http://madb.nci.nih.gov/.
Support
glass
Coating
polylysine
Submission date
Jun 21, 2006
Last update date
Jan 17, 2013
Contact name
Francesco Maria Marincola
E-mail(s)
fmarincola@sidra.org Phone
301-793-8210
Organization name
Sidra Medical and Research Center
Street address
Al Nasr Tower, AL Corniche Street, PO Box 26999
City
Doha
ZIP/Postal code
PO Box 26999
Country
Qatar
Samples (111)
GSM115590 , GSM115591 , GSM115592 , GSM115593 , GSM115594 , GSM115595
GSM115596 ,
GSM115597 ,
GSM115598 ,
GSM115599 ,
GSM115600 ,
GSM115601 ,
GSM115602 ,
GSM115603 ,
GSM115604 ,
GSM115605 ,
GSM115606 ,
GSM115607 ,
GSM115608 ,
GSM115609 ,
GSM115610 ,
GSM115611 ,
GSM115612 ,
GSM115613 ,
GSM115614 ,
GSM115615 ,
GSM115616 ,
GSM115617 ,
GSM115618 ,
GSM115619 ,
GSM115620 ,
GSM115621 ,
GSM115622 ,
GSM115623 ,
GSM115624 ,
GSM115625 ,
GSM115626 ,
GSM115627 ,
GSM115628 ,
GSM115629 ,
GSM115630 ,
GSM115631 ,
GSM115632 ,
GSM115633 ,
GSM115634 ,
GSM115635 ,
GSM115636 ,
GSM115637 ,
GSM115638 ,
GSM115639 ,
GSM115640 ,
GSM115641 ,
GSM115642 ,
GSM115643 ,
GSM115644 ,
GSM115645 ,
GSM115646 ,
GSM115647 ,
GSM115648 ,
GSM115649 ,
GSM115650 ,
GSM115651 ,
GSM115652 ,
GSM115653 ,
GSM115654 ,
GSM115655 ,
GSM115656 ,
GSM115657 ,
GSM115658 ,
GSM115659 ,
GSM115660 ,
GSM115661 ,
GSM218045 ,
GSM218046 ,
GSM218047 ,
GSM218048 ,
GSM218049 ,
GSM218050 ,
GSM218051 ,
GSM218052 ,
GSM218053 ,
GSM218054 ,
GSM218055 ,
GSM218056 ,
GSM218057 ,
GSM218058 ,
GSM218059 ,
GSM218060 ,
GSM218061 ,
GSM218062 ,
GSM218063 ,
GSM218064 ,
GSM218065 ,
GSM218066 ,
GSM218067 ,
GSM218068 ,
GSM218069 ,
GSM218070 ,
GSM218071 ,
GSM218072 ,
GSM218073 ,
GSM218074 ,
GSM218075 ,
GSM218076 ,
GSM218077 ,
GSM218078 ,
GSM218079 ,
GSM218080 ,
GSM218081 ,
GSM218082 ,
GSM218083 Series (3)
GSE5121 Imiquimod treated Basal Cell Carcinoma
GSE8777 Genetic alteration in recurrent melanoma
GSE8778 Genetic alteration in recurrent melanoma - part 2
Relations Affiliated with
GPL11019
Data table header descriptions ID NIH mAdb well id plus replicate number
MADB_WELL_ID NIH mAdb plate-well identifier for clone sample
CLONE_ID Clone identifier
GENE Gene Name
UNIGENE UniGene Identifier Build #Hs.191
DESCRIPTION Gene Description
GB_ACC GENBANK ID assigned by vendor
SPOT_ID OTHER
Data table ID MADB_WELL_ID CLONE_ID GENE UNIGENE DESCRIPTION GB_ACC SPOT_ID OTHER 184053_1
184053
IMAGE:970271
ATP1A3
515427
ATPase, Na+/K+ transporting, alpha 3 polypeptide
AA775957 184077_1
184077
IMAGE:454339
TPMT
444319
Thiopurine S-methyltransferase
AA677257 184101_1
184101
IMAGE:1032431
BMP8A
472497
Bone morphogenetic protein 8a
AA779480 184125_1
184125
IMAGE:549139
ARSD
584603
Arylsulfatase D
AA081038 184057_1
184057
IMAGE:120468
ERCC1
435981
Excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence)
T95367 184081_1
184081
IMAGE:502177
MYH11
460109
Myosin, heavy polypeptide 11, smooth muscle
AA128136 184105_1
184105
IMAGE:686081
PTPN7
402773
LPTPase=inducible lymphoid-specific, protein tyrosine phosphatase=protein tyrosine phosphatase, non-receptor type 7
AA262196 184129_1
184129
IMAGE:626967
ALPI
37009
Alkaline phosphatase, intestinal
AA190964 184061_1
184061
IMAGE:769542
P4HB
464336
Procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide
AA425983 184085_1
184085
IMAGE:878259
PRDX1
180909
Peroxiredoxin 1
AA775803 184109_1
184109
IMAGE:826984
CR2
445757
Complement component (3d/Epstein Barr virus) receptor 2
AA521362 184133_1
184133
IMAGE:50794
ZNF133
472221
Zinc finger protein 133 (clone pHZ-13)
H17047 184437_1
184437
IMAGE:195712
CYP2C9
418127
cytochrome P450, family 2, subfamily C, polypeptide 9
R89491 184461_1
184461
IMAGE:813254
F2R
482562
Coagulation factor II (thrombin) receptor
AA456376 184485_1
184485
IMAGE:771258
CD8A
85258
CD8 alpha chain
AA443649 184441_1
184441
IMAGE:810321
CARS
274873
Cysteinyl-tRNA synthetase
AA464214 184465_1
184465
IMAGE:363058
CLCN4
495674
Chloride channel 4
AA019413 184489_1
184489
IMAGE:66322
CD3G
2259
CD3 gamma
T66800 184513_1
184513
IMAGE:178818
APXL
567236
Apical protein-like (Xenopus laevis)
H49454 184445_1
184445
IMAGE:249688
CCND2
376071
Cyclin D2
H84153
16834 1508 Kbytes .Supplementary data files not provided
Less...
More...