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Platform GPL3946 Query DataSets for GPL3946
Status Public on Jul 06, 2006
Title Arabidopsis Whole Genome Tiling Array 17-rc-6
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Arabidopsis thaliana
Manufacturer Affymetrix
Manufacture protocol See manufacturer's web site
 
Description This Affymetrix array tiles the Arabidopsis genome end to end using in situ synthesized 25 bp oligonucleotides. The January 2002 version of the Arabidopsis genome sequence was originally used to make these chips, however, the position coordinates in the table are remapped on and refer to the Arabidopsis genome version 6 sequence.
 
Web link http://signal.salk.edu
Contributor(s) Palm CJ, Theologis A, Ecker JR, Davis R, Chen H
Submission date Jun 28, 2006
Last update date Jul 06, 2006
Contact name Joseph R. Ecker
E-mail(s) ecker@salk.edu
Phone 1-858-453-4100 x 1975
URL http://signal.salk.edu/
Organization name The Salk Institute
Department Genomic Analysis Laboratory
Lab Joseph R. Ecker
Street address 10010 N. Torrey Pines Road
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
 
Samples (2) GSM118521, GSM118525
Series (1)
GSE5387 Ethylene-insensitive5 encodes a 5'->3' exoribonuclease required for regulation of EIN3-targeting F-box proteins EBF1/2

Data table header descriptions
ID Unique id; derived from perfect match chip coordinate, chromosome, and range start
SEQUENCE Oligo probe sequence
CHROMOSOME Arabidopsis chromosome
RANGE_START start position of mapped probe relative to RANGE_GB
RANGE_END end position of mapped probe relative to RANGE_GB
RANGE_GB chromosome accession and version upon which probes are mapped
RANGE_STRAND chromosomal strand
PROBE_FREQUENCE frequence of probe appear on the genome
PROBE_TYPE PerfectMatch (PM) or MisMatch (MM) probe

Data table
ID SEQUENCE CHROMOSOME RANGE_START RANGE_END RANGE_GB RANGE_STRAND PROBE_FREQUENCE PROBE_TYPE
x0_y0_default_at_0 CAGCAGTTCTACGATGGCAAGTCCT 0 24 + 1 PM
x0_y100_default_st_0 AGGACTTGCCATCGTAGAACTGCTG 0 24 - 1 PM
x0_y101_default_at_0 CAGCAGTTCTACGATGGCAAGTCCT 0 24 + 1 PM
x0_y102_default_st_0 AGGACTTGCCATCGTAGAACTGCTG 0 24 - 1 PM
x0_y103_default_at_0 CAGCAGTTCTACGATGGCAAGTCCT 0 24 + 1 PM
x0_y104_default_st_0 AGGACTTGCCATCGTAGAACTGCTG 0 24 - 1 PM
x0_y105_default_at_0 CAGCAGTTCTACGATGGCAAGTCCT 0 24 + 1 PM
x0_y106_default_st_0 AGGACTTGCCATCGTAGAACTGCTG 0 24 - 1 PM
x0_y107_default_at_0 CAGCAGTTCTACGATGGCAAGTCCT 0 24 + 1 PM
x0_y108_default_st_0 AGGACTTGCCATCGTAGAACTGCTG 0 24 - 1 PM
x0_y109_default_at_0 CAGCAGTTCTACGATGGCAAGTCCT 0 24 + 1 PM
x0_y10_default_st_0 AGGACTTGCCATCGTAGAACTGCTG 0 24 - 1 PM
x0_y110_default_st_0 AGGACTTGCCATCGTAGAACTGCTG 0 24 - 1 PM
x0_y111_default_at_0 CAGCAGTTCTACGATGGCAAGTCCT 0 24 + 1 PM
x0_y112_default_st_0 AGGACTTGCCATCGTAGAACTGCTG 0 24 - 1 PM
x0_y113_default_at_0 CAGCAGTTCTACGATGGCAAGTCCT 0 24 + 1 PM
x0_y114_default_st_0 AGGACTTGCCATCGTAGAACTGCTG 0 24 - 1 PM
x0_y115_default_at_0 CAGCAGTTCTACGATGGCAAGTCCT 0 24 + 1 PM
x0_y116_default_st_0 AGGACTTGCCATCGTAGAACTGCTG 0 24 - 1 PM
x0_y117_default_at_0 CAGCAGTTCTACGATGGCAAGTCCT 0 24 + 1 PM

Total number of rows: 818872

Table truncated, full table size 70975 Kbytes.




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Supplementary data files not provided
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