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Status
Public on Jul 21, 2006
Title
3.7k full genome LUMC BAC array
Technology type
spotted DNA/cDNA
Distribution
non-commercial
Organism
Homo sapiens Manufacturer
LUMC, dept of Molecular Cell Biology
Manufacture protocol
The array contains 3700 probes spotted in triplicate on glass slides. The BAC set is distributed by the Welcome Trust Sanger Institute (Hinxton, UK), and comprises of 1 mb spaced probes, a set of subtelomeric sequences for each chromosome arm, and a few hundred probes selected for their involvement in oncogenesis. Reference: Knijnenburg J, Szuhai K, et.al. Am J Med Genet A. 2005 Jan 1;132(1):36-40. Insights from genomic microarrays into structural chromosome rearrangements.
Contributor(s)
Oosting J , Szuhai K Citation(s)
15558722 Submission date
Jul 18, 2006
Last update date
May 25, 2012
Contact name
Jan Oosting
Phone
+31 71 5266619
Organization name
Leiden University Medical Center
Department
Pathology
Street address
Albinusdreef 2
City
Leiden
ZIP/Postal code
2333ZA
Country
Netherlands
Samples (57)
GSM121536 , GSM121537 , GSM121538 , GSM121539 , GSM142094 , GSM142095
GSM142096 ,
GSM226732 ,
GSM226733 ,
GSM226734 ,
GSM226735 ,
GSM226736 ,
GSM226737 ,
GSM226738 ,
GSM226739 ,
GSM226740 ,
GSM226741 ,
GSM265917 ,
GSM265918 ,
GSM265919 ,
GSM265920 ,
GSM265921 ,
GSM265922 ,
GSM265923 ,
GSM265924 ,
GSM265925 ,
GSM265926 ,
GSM265927 ,
GSM265928 ,
GSM265929 ,
GSM265930 ,
GSM265931 ,
GSM265932 ,
GSM265933 ,
GSM265934 ,
GSM265935 ,
GSM265936 ,
GSM265937 ,
GSM265938 ,
GSM265939 ,
GSM265940 ,
GSM265941 ,
GSM265942 ,
GSM265943 ,
GSM265944 ,
GSM265945 ,
GSM265946 ,
GSM265947 ,
GSM265948 ,
GSM265949 ,
GSM265950 ,
GSM265951 ,
GSM265952 ,
GSM265953 ,
GSM265954 ,
GSM265955 ,
GSM265956 Series (3)
GSE5347 High Resolution Copy Number Analysis of Paraffin Embedded Archival Tissue Using SNP BeadArrays
GSE8605 Combined arrayCGH and SNP-loss of heterozygosity analysis in cervical cancer
GSE10524 Genomic alterations and gene expression in primary diffuse large B cell lymphomas of immune privileged sites
Relations Affiliated with
GPL13392
Data table header descriptions ID Block block on slide
Row row within block
Column column within block
CLONE_ID International Clone ID
Name Internal Numerical ID
SangerClone Original Sanger Clone ID
Chromosome Chromosome
Mbposition Starting poition of clone
SESend Ending position of clone
Plateinfo exclude Positions with consistent low quality spots or blanks
polymorph Clones with known polymorphic behaviour
Data table ID Block Row Column CLONE_ID Name SangerClone Chromosome Mbposition SESend Plateinfo exclude polymorph 1
1
1
1
RP11-13A2 2092
bA13A2
10
63780499
63955335
SC10_1A4
0
0
2
1
1
2
RP11-13A2 2092
bA13A2
10
63780499
63955335
SC10_1A4
0
0
3
1
1
3
RP11-13A2 2092
bA13A2
10
63780499
63955335
SC10_1A4
0
0
4
1
1
4
RP11-16O1 2043
bA16O1
10
17758041
17921747
SC10_1A8
0
0
5
1
1
5
RP11-16O1 2043
bA16O1
10
17758041
17921747
SC10_1A8
0
0
6
1
1
6
RP11-16O1 2043
bA16O1
10
17758041
17921747
SC10_1A8
0
0
7
1
1
7
RP11-37P5 2041
bA37P5
10
16038936
16196794
SC10_1A12
0
0
8
1
1
8
RP11-37P5 2041
bA37P5
10
16038936
16196794
SC10_1A12
0
0
9
1
1
9
RP11-37P5 2041
bA37P5
10
16038936
16196794
SC10_1A12
0
0
10
1
1
10
RP11-122K13 2180
bA122K13
10
135110481
135111152
SC10_1C4
0
0
11
1
1
11
RP11-122K13 2180
bA122K13
10
135110481
135111152
SC10_1C4
0
0
12
1
1
12
RP11-122K13 2180
bA122K13
10
135110481
135111152
SC10_1C4
0
0
13
1
1
13
RP11-151A10 2172
bA151A10
10
126760603
126954956
SC10_1C8
0
0
14
1
1
14
RP11-151A10 2172
bA151A10
10
126760603
126954956
SC10_1C8
0
0
15
1
1
15
RP11-151A10 2172
bA151A10
10
126760603
126954956
SC10_1C8
0
0
16
1
1
16
RP11-162E8 2051
bA162E8
10
24159166
24341427
SC10_1C12
0
0
17
1
1
17
RP11-162E8 2051
bA162E8
10
24159166
24341427
SC10_1C12
0
0
18
1
1
18
RP11-162E8 2051
bA162E8
10
24159166
24341427
SC10_1C12
0
0
19
1
1
19
RP13-238F13 2170
bB238F13
10
126007431
126190348
SC10_1E4
0
0
20
1
1
20
RP13-238F13 2170
bB238F13
10
126007431
126190348
SC10_1E4
0
0
12800 827 Kbytes .Supplementary data files not provided
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