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Status
Public on Aug 03, 2006
Title
UAF Arctic Ground Squirrel Illumina BeadArray 1A
Technology type
oligonucleotide beads
Distribution
custom-commercial
Organisms
Urocitellus parryii ; Ictidomys tridecemlineatus ; Callospermophilus lateralis Manufacturer
Illumina
Manufacture protocol
http://www.illumina.com/technology/platform/tech_plat_arraymfg.ilmn Catalog number
CUSTOM_ARRAY_ALASKA_1A_11203111_A
Description
This array (1A) contains the first 707 genes designed from the mixed sequences of three close-related ground squirrel species: golden-mantled ground squirrel; thirteen-lined ground squirrel; arctic ground squirrel. Two 50bps probes were designed for each gene.
Contributor(s)
Yan J , Kohl F , Barnes BM , Marr TG Submission date
Jul 29, 2006
Last update date
Jan 17, 2013
Contact name
Jun Yan
E-mail(s)
jy272@nyu.edu Phone
907-474-6384
Fax
907-450-8601
Organization name
University of Alaska Fairbanks
Department
Institute of Arctic Biology
Street address
311 Irving Building
City
Fairbanks
State/province
AK
ZIP/Postal code
99775
Country
USA
Samples (144)
GSM124010 , GSM124011 , GSM124012 , GSM124013 , GSM124014 , GSM124015
GSM124016 ,
GSM124017 ,
GSM124018 ,
GSM124019 ,
GSM124020 ,
GSM124021 ,
GSM124022 ,
GSM124023 ,
GSM124024 ,
GSM124025 ,
GSM124026 ,
GSM124027 ,
GSM124028 ,
GSM124029 ,
GSM124030 ,
GSM124031 ,
GSM124032 ,
GSM124033 ,
GSM124034 ,
GSM124035 ,
GSM124036 ,
GSM124037 ,
GSM124038 ,
GSM124039 ,
GSM124040 ,
GSM124041 ,
GSM124042 ,
GSM124043 ,
GSM124044 ,
GSM124045 ,
GSM124046 ,
GSM124047 ,
GSM124048 ,
GSM124049 ,
GSM124050 ,
GSM124051 ,
GSM124052 ,
GSM124053 ,
GSM124054 ,
GSM124055 ,
GSM124056 ,
GSM124057 ,
GSM124058 ,
GSM124059 ,
GSM124060 ,
GSM124061 ,
GSM124062 ,
GSM124063 ,
GSM124064 ,
GSM124065 ,
GSM124066 ,
GSM124067 ,
GSM124068 ,
GSM124069 ,
GSM124070 ,
GSM124071 ,
GSM124072 ,
GSM124073 ,
GSM124074 ,
GSM124075 ,
GSM124076 ,
GSM124077 ,
GSM124078 ,
GSM124079 ,
GSM124080 ,
GSM124081 ,
GSM124082 ,
GSM124083 ,
GSM124084 ,
GSM124085 ,
GSM124086 ,
GSM124087 ,
GSM124088 ,
GSM124089 ,
GSM124090 ,
GSM124091 ,
GSM124092 ,
GSM124093 ,
GSM124094 ,
GSM124095 ,
GSM124096 ,
GSM124097 ,
GSM124098 ,
GSM124099 ,
GSM124100 ,
GSM124101 ,
GSM124102 ,
GSM124103 ,
GSM124104 ,
GSM124105 ,
GSM124106 ,
GSM124107 ,
GSM124108 ,
GSM124109 ,
GSM124110 ,
GSM124111 ,
GSM124112 ,
GSM124113 ,
GSM124114 ,
GSM124115 ,
GSM124116 ,
GSM124117 ,
GSM124118 ,
GSM124119 ,
GSM124120 ,
GSM124121 ,
GSM124122 ,
GSM124123 ,
GSM124124 ,
GSM124125 ,
GSM124126 ,
GSM124127 ,
GSM124128 ,
GSM124129 ,
GSM124130 ,
GSM124131 ,
GSM124132 ,
GSM124133 ,
GSM124134 ,
GSM124135 ,
GSM124136 ,
GSM124137 ,
GSM124138 ,
GSM124139 ,
GSM124140 ,
GSM124141 ,
GSM124142 ,
GSM124143 ,
GSM124144 ,
GSM124145 ,
GSM124146 ,
GSM124147 ,
GSM124148 ,
GSM124149 ,
GSM124150 ,
GSM124151 ,
GSM124152 ,
GSM124153 Series (1)
GSE5414 Gene Expression data of Arctic Ground Squirrel during the multiple stages of hibernation
Data table header descriptions ID TargetID
AGS_Seq_ID Ground squirrel sequence ID from which the probes are designed
Homolog_RefSeq_Acc Homologous RefSeq Accession number identified by Blastn program
Gene_name Gene Name of homologous RefSeq sequence
Gene_symbol Gene Symbol of homologous RefSeq sequence
SEQUENCE Sequence of the first 50bps probe
SEQUENCE Sequence of the second 50bps probe
Data table ID AGS_Seq_ID Homolog_RefSeq_Acc Gene_name Gene_symbol SEQUENCE SEQUENCE AGS1_SP00001-S
AGS1
NM_002046
Glyceraldehyde-3-phosphate dehydrogenase
GAPDH
CTCACTGGCATGGCTTTCCGTGTGCCCACTCCCAATGTGTCAGTTGTGGA
ACTCATGACCACAGTCCATGCCATCACTGCTACTCAGAAGACTGTGGATG
AGS10_SP00015-S
AGS10
NM_000925
Pyruvate dehydrogenase (lipoamide) beta
PDHB
ACAAAAGGATTATAGATACTCCCATATCTGAGATGGGCTTTGCTGGAATT
ATTTGTGAATTTATGACCTTTAATTTCTCCATGCAAGCCATTGACCAGGT
AGS100_SL15-S
AGS100
NM_001274
CHK1 checkpoint homolog (S. pombe)
CHEK1
AACGTTTATTGAACAAGATGTGTGGTACTTTACCTTATGTTGCTCCAGAA
TTTATCTTCATGGCATTGGAATAACTCACAGGGACATTAAACCAGAAAAT
AGS101_SL16-S
AGS101
NM_006372
Synaptotagmin binding, cytoplasmic RNA interacting protein
SYNCRIP
GCACATAGTGATTTAGATGAAAGAGCTATCGAAGCTTTAAAAGAGTTCAA
AAAGTTGCAGATTCTAGTAAAGGACCAGATGAAGCAAAAATTAAGGCACT
AGS102_SL17-S
AGS102
NM_005026
Phosphoinositide-3-kinase, catalytic, delta polypeptide
PIK3CD
AGCAACACCTCTCAAATCTCCAACCCAGACCTGCTGGTCAATGTCAAATT
ATGGAATTCTGGACCGAGGAGGAGAAGAATCAGAGTGTGGTGGTTGACTT
AGS103_SL18-S
AGS103
NM_003909
Copine III
CPNE3
TGTGCTATGGAGATATGGACAAAACCATTAAGGTAGAATGTTATGATTAT
TTGTTTGAAATGGAAGCCAGAAAACTGGATAATAAGGATCTATTTGGAAA
AGS105_SL20-S
AGS105
NM_006965
Zinc finger protein 24 (KOX 17)
ZNF24
ATTCAATACTTATCATCCCAACTCCAGATGAAGAGGAAAAAATTCTTAGA
AAGTTCCTGGTACTCTCAATATAGGTGTTCCTCAGATTTTTAAATATGGA
AGS106_SL21-S
AGS106
NM_022080
N-ethylmaleimide-sensitive factor attachment protein, beta
NAPB
TCCAGCATTTACTGATTCAAGAGAATGTAAATTACTGAAAAAACTTCTAG
AAATACTATGGATAATCCTCTGTTGAAGTACAGTGCAAAAGATTACTTCT
AGS107_SL22-S
AGS107
NM_001570
Interleukin-1 receptor-associated kinase 2
IRAK2
TTTGCTGATGTCTACAGAGGGCAAAGGCACGGAATGCCCTTAGCCTTCAA
AAAAGTGCTCAAACATGACTGAAGAAAGTCTTTTCTGGAGTGAGGCAGAA
AGS108_SL23-S
AGS108
NM_012447
Stromal antigen 3
STAG3
TTTTGTCTTATTAAGTGATATGCTTCTCATCTTCAGCCCTCAGATGATTT
AGCCTTGACTCTTGTCTATTTTTCCATTCTTTGGACACTAACCCACATTT
AGS109_SL24-S
AGS109
NM_006122
Mannosidase, alpha, class 2A, member 2
MAN2A2
TTATCATCAATGCAGCTCATTATCTGGTGCTAGGGGACAAGGATACCTAT
GACCATTACTGGACAGGCTATTATACTTCCAGACCTTTCTACAAGAGTCT
AGS11_CO734066-S
AGS11
NM_001931
Dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)
DLAT
AGAAAAAAGAAGGAGAAAAAATCAATGAGGGAGATCTAATTGCAGAAGTT
CCATTATTTGTATCACAGTTGGAAAACCTGAAGATATTGAAGCCTTTTAA
AGS110_SL25-S
AGS110
NM_013328
Pyrroline-5-carboxylate reductase family, member 2
PYCR2
AAGATGCTACTGGATTCAGAGGACCATCCAGGCCAGCTCAAGGACAATGT
TCTCTGCTCATCAATGCAGTTGAGGCTTCTTGTATCCGAACACGAGAGCT
AGS111_SL26-S
AGS111
NM_138342
Hypothetical protein BC008326
LOC89944
CTTCAACACTGTTACCACCTACATTCCATGGAACCTGCATGAGCCAGAAA
AAACTGAGAACAACAGACAAAGGCTTTGTTGAAGCAGTTGATAAGTATTT
AGS113_SL28-S
AGS113
NM_004520
Kinesin heavy chain member 2
KIF2
AACAAACATTTCGTTTTTGATTATGCCTTGATGACTCGCTCCTAATGAAA
GATTATAGACCACTAACAACAGCAGATCCTATTGATGAACATAGAAATAT
AGS114_SL29-S
AGS114
NM_058179
Phosphoserine aminotransferase 1
PSAT1
AAACTTCTTATCCAAGCCAGTGGATGTTTCCAAGTTTGGTGTGATTTTTG
GAACATTGTCCATCCTAAACTTGGGAGCTATACAAAAATTCCAGATCCAA
AGS115_SL30-S
AGS115
NM_017647
FtsJ homolog 3 (E. coli)
FTSJ3
GATTTTTGGCTCCTGACAAGGTTGACAGTAAATTCTTCGATCCCAAGTTT
TTGTGATTTTTTGGCTCGTGGTGGTTGCTTCATCACAAAGGTTTTTCGTT
AGS116_SL31-S
AGS116
NM_004725
BUB3 budding uninhibited by benzimidazoles 3 homolog (yeast)
BUB3
TGCTTTCAAATGTCACAGACTAAAAGAAAATAATATTGAGCAGATTTACC
TGCATAAGAGCATTTCCTAACAAGCAGGGCTATGTATTAAGCTCTATTGA
AGS119_SL34-S
AGS119
NM_002844
Protein tyrosine phosphatase, receptor type, K
PTPRK
AATTATTGGAGATGGTCCCATTATCCTGAAAGAAGTGGAATATCGAATGA
AACTTATAAATTGTGGCATTTAGATCCAGATACTGAATATGAGATCCGAG
AGS12_SP00017-S
AGS12
NM_002612
Pyruvate dehydrogenase kinase, isozyme 4
PDK4
CCCCTCCCCGCTTTCCATGAAGCAGCTGCTGGACTTTGGTTCAGACAATG
AACTTCTTTTTCATTTTTGCGACAAGAATTGCCAGTGAGACTAGCCAATA
707 125 Kbytes .Supplementary data files not provided
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