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Status
Public on Aug 03, 2006
Title
UAF Arctic Ground Squirrel Illumina BeadArray 2A
Technology type
oligonucleotide beads
Distribution
custom-commercial
Organisms
Urocitellus parryii ; Ictidomys tridecemlineatus ; Callospermophilus lateralis Manufacturer
Illumina
Manufacture protocol
http://www.illumina.com/technology/platform/tech_plat_arraymfg.ilmn Catalog number
CUSTOM_ARRAY_ALASKA_2A_11203137_A
Description
This array (2A) contains the second 707 genes designed from the mixed sequences of three close-related ground squirrel species: golden-mantled ground squirrel; thirteen-lined ground squirrel; arctic ground squirrel. Two 50bps probes were designed for each gene.
Contributor(s)
Yan J , Kohl F , Barnes BM , Marr TG Submission date
Jul 29, 2006
Last update date
Jan 17, 2013
Contact name
Jun Yan
E-mail(s)
jy272@nyu.edu Phone
907-474-6384
Fax
907-450-8601
Organization name
University of Alaska Fairbanks
Department
Institute of Arctic Biology
Street address
311 Irving Building
City
Fairbanks
State/province
AK
ZIP/Postal code
99775
Country
USA
Samples (144)
GSM124154 , GSM124155 , GSM124156 , GSM124157 , GSM124158 , GSM124159
GSM124160 ,
GSM124161 ,
GSM124162 ,
GSM124163 ,
GSM124164 ,
GSM124165 ,
GSM124166 ,
GSM124167 ,
GSM124168 ,
GSM124169 ,
GSM124170 ,
GSM124171 ,
GSM124172 ,
GSM124173 ,
GSM124174 ,
GSM124175 ,
GSM124176 ,
GSM124177 ,
GSM124178 ,
GSM124179 ,
GSM124180 ,
GSM124181 ,
GSM124182 ,
GSM124183 ,
GSM124184 ,
GSM124185 ,
GSM124186 ,
GSM124187 ,
GSM124188 ,
GSM124189 ,
GSM124190 ,
GSM124191 ,
GSM124192 ,
GSM124193 ,
GSM124194 ,
GSM124195 ,
GSM124196 ,
GSM124197 ,
GSM124198 ,
GSM124199 ,
GSM124200 ,
GSM124201 ,
GSM124202 ,
GSM124203 ,
GSM124204 ,
GSM124205 ,
GSM124206 ,
GSM124207 ,
GSM124208 ,
GSM124209 ,
GSM124210 ,
GSM124211 ,
GSM124212 ,
GSM124213 ,
GSM124214 ,
GSM124215 ,
GSM124216 ,
GSM124217 ,
GSM124218 ,
GSM124219 ,
GSM124220 ,
GSM124221 ,
GSM124222 ,
GSM124223 ,
GSM124224 ,
GSM124225 ,
GSM124226 ,
GSM124227 ,
GSM124228 ,
GSM124229 ,
GSM124230 ,
GSM124231 ,
GSM124232 ,
GSM124233 ,
GSM124234 ,
GSM124235 ,
GSM124236 ,
GSM124237 ,
GSM124238 ,
GSM124239 ,
GSM124240 ,
GSM124241 ,
GSM124242 ,
GSM124243 ,
GSM124244 ,
GSM124245 ,
GSM124246 ,
GSM124247 ,
GSM124248 ,
GSM124249 ,
GSM124250 ,
GSM124251 ,
GSM124252 ,
GSM124253 ,
GSM124254 ,
GSM124255 ,
GSM124256 ,
GSM124257 ,
GSM124258 ,
GSM124259 ,
GSM124260 ,
GSM124261 ,
GSM124262 ,
GSM124263 ,
GSM124264 ,
GSM124265 ,
GSM124266 ,
GSM124267 ,
GSM124268 ,
GSM124269 ,
GSM124270 ,
GSM124271 ,
GSM124272 ,
GSM124273 ,
GSM124274 ,
GSM124275 ,
GSM124276 ,
GSM124277 ,
GSM124278 ,
GSM124279 ,
GSM124280 ,
GSM124281 ,
GSM124282 ,
GSM124283 ,
GSM124284 ,
GSM124285 ,
GSM124286 ,
GSM124287 ,
GSM124288 ,
GSM124289 ,
GSM124290 ,
GSM124291 ,
GSM124292 ,
GSM124293 ,
GSM124294 ,
GSM124295 ,
GSM124296 ,
GSM124297 Series (1)
GSE5414 Gene Expression data of Arctic Ground Squirrel during the multiple stages of hibernation
Data table header descriptions ID TargetID
AGS_Seq_ID Ground squirrel sequence ID from which the probes are designed
Homolog_RefSeq_Acc Homologous RefSeq Accession number identified by Blastn program
Gene_name Gene Name of homologous RefSeq sequence
Gene_symbol Gene Symbol of homologous RefSeq sequence
SEQUENCE Sequence of the first 50bps probe
SEQUENCE Sequence of the second 50bps probe
Data table ID AGS_Seq_ID Homolog_RefSeq_Acc Gene_name Gene_symbol SEQUENCE SEQUENCE AGS1_SP00001-S
AGS1
NM_002046
Glyceraldehyde-3-phosphate dehydrogenase
GAPDH
CTCACTGGCATGGCTTTCCGTGTGCCCACTCCCAATGTGTCAGTTGTGGA
ACTCATGACCACAGTCCATGCCATCACTGCTACTCAGAAGACTGTGGATG
AGS1000_SL915-S
AGS1000
NM_003299
Heat shock protein 90kDa beta (Grp94), member 1
HSP90B1
TGAATTTTTAAACAAAATGACTGAAGCACAAGAAGATAGCCAGTCAACTT
TTGGATACAATTCAAATCTCGTCAAAAAATATCGCAGTTATCATTTTCCA
AGS1001_SL916-S
AGS1001
NM_018196
Trimethyllysine hydroxylase, epsilon
TMLHE
ACTACCTATTTTCAAGAGCCCTGTGGCATTCAAGTATTTCACTGTCTTAA
ATATATTGAAAATGGTTGAAAAATGTCAAAACCACATAATTGGAGTTGGG
AGS1002_SL917-S
AGS1002
NM_213590
Ret finger protein 2
RFP2
CAGGTTAATTACTCCCTGAAAGGTATTGTGGAGAAATACAACAAAATCAA
TTTTGCCTTGTTCACACAACTTCTGCAAAAAATGCTTAGAAGGTCTCTTA
AGS1003_SL918-S
AGS1003
NM_033375
V-crk sarcoma virus CT10 oncogene homolog (avian)
CRK
TTCAGCAAAAGGCATGGGCTTATTGAGATTTTCAAGGCAAAAAAGGATAA
TATAAGATGGGCAGGACCAAGATTTTCATACGCTTCCCTAAGAACCTGTT
AGS1004_SL919-S
AGS1004
NM_000274
Ornithine aminotransferase (gyrate atrophy)
OAT
TGGAGAAAGGGAAAGGTATTTATGTGTGGGATGTAGAAGGAAGAAAATAT
TATGTTACCAAACTGTTCAATTACCACAAAGTTCTACCCATGAATACAGG
AGS1005_SL920-S
AGS1005
NM_006224
Phosphatidylinositol transfer protein, alpha
PITPNA
CAAATTGGAAGCAAGAACTTGTAAATCAGAAAGACTGCCCATATATGTGT
AACAAAGTGGAAAATTTTATACATAAGCAAGAGAAGCGTCTGTTTACAAA
AGS1006_SL921-S
AGS1006
NM_007315
Signal transducer and activator of transcription 1, 91kDa
STAT1
ACGAAGAAAGAACTTTCTGCTGTTACTTTTCCTGATATAATTCGCAATTA
ATTTTTCCTTCTGGCTTTGGATTGAAAACATCCTAGAACTCATTAAAAAA
AGS1007_SL922-S
AGS1007
NM_172115
Calcium/calmodulin-dependent protein kinase (CaM kinase) II delta
CAMK2D
ACACCTGGATATCTTTCTCCAGAAGTTTTACGTAAAGATCCTTATGGAAA
GTCATTGTATACAGCAGATTCTAGAAAGTGTAAATCATTGTCACCTAAAT
AGS1008_SL923-S
AGS1008
NM_001011658
Trafficking protein particle complex 2
TRAPPC2
TTATACATAAAGTTTGCCATGAATCCATTTTATGAACCCAATTCTCCTAT
ATTTATTATGCTTCATGATATAAGGCAAGAAGATGGAATCAAGAACTTCT
AGS1009_SL924-S
AGS1009
NM_032632
Poly(A) polymerase alpha
PAPOLA
AGAAGATTTGGACCTACGAGATGACAGTCTACTTAAAAATTTAGATATAA
GCAATAGCATCAACTCTTGTACATAAATTTTTCTTGGTATTTTCTAAATG
AGS1010_SL925-S
AGS1010
NM_002625
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1
PFKFB1
AAAAGTTCTGGAAGATTTTTCTAAGAGAATTTGATGCTATGAGGTCAACT
TTTTTCATTGAGTCTATATGTAATGACCCTGACATCATTGCAGAAAACAT
AGS1011_SL926-S
AGS1011
NM_000875
Insulin-like growth factor 1 receptor
IGF1R
AACAAAGACTATTGATTCTGTTACTTCTGCTCAAATGCTCCAAGGATGTA
AAAGCAAAAGAGACATAAACACCAGAAAACATGGAGAAAGAGCCTCCTGT
AGS1012_SL927-S
AGS1012
NM_001017416
Ubiquitin specific peptidase 1
USP1
TACTAAGGTAGAAGAAAAACCTCATCAAAAAGAGGAAATGAGTGGAATTA
AAGTACTACAGTGTATTTTGGGAAACATTCAAGAAACATGCCAACTTCTA
AGS1013_SL928-S
AGS1013
NM_005962
MAX interactor 1
MXI1
CAATAAAGCCAAAGCACACATCAAGAAACTTGAAGAAGTTGAAAGGAAAA
AAATGGAACGAATACGAATGGACAGCATTGGATCAACTATTTCTTCAGAT
AGS1014_SL929-S
AGS1014
NM_014946
Spastin
SPAST
TATATGTGTCTTTACCAAATGAAGAGACCAGACTACTTTTACTTAAGAAT
AAATATTCGATTGTCTGACTTCACGGAATCCTTGAAAAAGATAAAACGCA
AGS1015_SL930-S
AGS1015
NM_001461
Flavin containing monooxygenase 5
FMO5
TAAATGATGATCTGCCTAACCGTATAATTTCTGGCTTGGTGAAGGTGAAA
GATATCCTTTCGATGTGGTACACTTTTCTCGACTTAAACATCTTATATCA
AGS1017_SL932-S
AGS1017
NM_015978
TNNI3 interacting kinase
TNNI3K
TAGCATCTGCAAAGGGATTCTTTAATATTGCAAAACTTCTGATGGAAGAT
TTTTGAAATTTGGAGCTGATGTAAATGTAAGTGGTGAAGTTGGAGATAGA
AGS1019_SL934-S
AGS1019
NM_001788
Septin 7
Septin 8
CAGAGGAATGCCAACAGTTTAAAAAACAGATAATGAAAGAAATTCAAGAA
TTCCTGAAACAGATGATGAAGAAGAAAATAAGCTGGTTAAAAAGATAAAG
AGS1020_SL935-S
AGS1020
NM_014165
Chromosome 6 open reading frame 66
C6orf66
TTAGAACTGAAAGATGTAAATGCCCTGCTCAAGTATTTTGTTACTTTTGA
ATATTAACAACATTCCTAACGGCAAAATATCCATTGTAGAAGCATTAACA
707 125 Kbytes .Supplementary data files not provided
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