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Platform GPL4047 Query DataSets for GPL4047
Status Public on Aug 01, 2006
Title Saur2a custom-made Affymetrix array
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Staphylococcus aureus
Manufacturer Affymetrix
Manufacture protocol Affymetrix standard 25-mers, match/mismatch 18 micron array
Nominally 34 probepairs/ORF, 15 probepairs/intergenic region
alpha1=0.0575, alpha2=0.0971
 
 
Contributor(s) Murphy E
Submission date Jul 31, 2006
Last update date Aug 01, 2006
Contact name Ellen Murphy
E-mail(s) murphye3@wyeth.com
Phone 845-602-4411
Organization name Wyeth Research
Department Vaccines
Street address 401 N. Middletown Road
City Pearl River
State/province NY
ZIP/Postal code 10965
Country USA
 
Samples (45) GSM125258, GSM125259, GSM125260, GSM125261, GSM125262, GSM125263 
Series (3)
GSE5466 Transcriptional profiling of a Staphylococcus aureus clinical isolate UAMS1 and its isogenic agr and sarA mutants
GSE10033 Comparison of gene expression in Staphylococcus aureus strain SH1000 wildtype vs mepR
GSE30544 Changes in the Staphylococcus aureus transcriptome during early adaptation to the lung

Data table header descriptions
ID
FEATURE_TYPE ORF, RNA, intergenic region or control
EXEMPLAR_STRAIN One strain from which the consensus was derived: N315, COL, Mu50, MSSA476, MRSA252, MW2 or 8325. Blank for non-genome source
ORF EXEMPLAR_LOCUSTAG: locustag (eg SA0001) from exemplar strain; blank if non-genome source
EXEMPLAR_COMMON gene name if exists
EXEMPLAR_DESCRIPTION description from exemplar gene
EXEMPLAR_GENOME_ACC Refseq genome accession for exemplar if genome source; otherwise genbank accession
EXEMPLAR_COORDINATES tiling sequences start/stop coordinates from genome or genbank accession
COL gene locustag from COL genome, if exists
SPOT_ID spot identifier
RANGE_GB Refseq genome accession for exemplar if genome source; otherwise genbank accession
RANGE_START tiling sequences start coordinates from genome or genbank accession
RANGE_END tiling sequences stop coordinates from genome or genbank accession
RANGE_STRAND + or - strand

Data table
ID FEATURE_TYPE EXEMPLAR_STRAIN ORF EXEMPLAR_COMMON EXEMPLAR_DESCRIPTION EXEMPLAR_GENOME_ACC EXEMPLAR_COORDINATES COL gene SPOT_ID RANGE_GB RANGE_START RANGE_END RANGE_STRAND
WAN014GJW_at ORF 8325 SAOUHSC_02028 phiETA ORF57-like protein NC_007795.1 c1931080..1932903 ORF NC_007795.1 1931080 1932903 -
WAN014GJX_at ORF 8325 SAOUHSC_02033 phage tape measure protein NC_007795.1 c1937698..1941165 ORF NC_007795.1 1937698 1941165 -
WAN014GK0_at ORF 8325 SAOUHSC_02044 hypothetical protein NC_007795.1 c1945262..1945882 ORF NC_007795.1 1945262 1945882 -
WAN014GKA_x_at ORF 8325 SAOUHSC_02063 PV83 orf 23-like protein-related protein NC_007795.1 c1953964..1954149 ORF NC_007795.1 1953964 1954149 -
WAN014GKD_at ORF 8325 SAOUHSC_02070 phi ETA orf 20-like protein NC_007795.1 c1957378..1958070 ORF NC_007795.1 1957378 1958070 -
WAN014GKE_at ORF 8325 SAOUHSC_02221 hypothetical protein NC_007795.1 c2066531..2067310 ORF NC_007795.1 2066531 2067310 -
WAN014GKF_at ORF 8325 SAOUHSC_02073 hypothetical protein NC_007795.1 c1959447..1959983 ORF NC_007795.1 1959447 1959983 -
WAN014GKI_at ORF 8325 SAOUHSC_02078 phi PV83 orf 10-like protein NC_007795.1 c1961045..1961494 ORF NC_007795.1 1961045 1961494 -
WAN014GKO_at ORF 8325 SAOUHSC_00391 hypothetical protein NC_007795.1 394121..394816 ORF NC_007795.1 394121 394816 +
WAN014GM2_at ORF 8325 SAOUHSC_02206 hypothetical protein NC_007795.1 c2060407..2060601 ORF NC_007795.1 2060407 2060601 -
WAN014GM6_at ORF 8325 SAOUHSC_02216 phage DnaC-like protein NC_007795.1 c2063220..2063999 ORF NC_007795.1 2063220 2063999 -
WAN014GM7_at ORF 8325 SAOUHSC_02217 phi ETA orf 22-like protein NC_007795.1 c2064009..2064779 ORF NC_007795.1 2064009 2064779 -
WAN014GM8_at ORF 8325 SAOUHSC_02220 phi ETA orf 18-like protein NC_007795.1 c2065949..2066500 ORF NC_007795.1 2065949 2066500 -
WAN014GMH_at ORF 8325 SAOUHSC_02238 phi PVL ORF 30-like protein NC_007795.1 c2072815..2073429 ORF NC_007795.1 2072815 2073429 -
WAN014GMM_at ORF 8325 SAOUHSC_02087 hypothetical protein NC_007795.1 1964729..1965634 ORF NC_007795.1 1964729 1965634 +
WAN014GMN_at ORF 8325 SAOUHSC_02089 integrase, phage family, putative NC_007795.1 1965883..1966929 ORF NC_007795.1 1965883 1966929 +
WAN014GN1_at ORF 8325 SAOUHSC_02237 hypothetical protein NC_007795.1 2072672..2072818 ORF NC_007795.1 2072672 2072818 +
WAN014GO9_x_at ORF 8325 SAOUHSC_01560 hypothetical protein NC_007795.1 c1496853..1497110 ORF NC_007795.1 1496853 1497110 -
WAN014IRG_at ORF 8325 SAOUHSC_02022 phage tail fiber protein, putative NC_007795.1 c1926967..1928139 ORF NC_007795.1 1926967 1928139 -
WAN014IRL_at ORF 8325 SAOUHSC_02086 PV83 orf 4-like protein-related protein NC_007795.1 1964508..1964693 ORF NC_007795.1 1964508 1964693 +

Total number of rows: 7792

Table truncated, full table size 922 Kbytes.






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