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Platform GPL4060 Query DataSets for GPL4060
Status Public on Jun 15, 2007
Title MDL human 3k oligo array
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Homo sapiens
Manufacturer Molecular Diagnostic Laboratory, Aarhus University Hospital, Skjejby, Denmark
Manufacture protocol Detailed protocol in:
Microarrays for gene expression profiling: Fabrication of Oligonucleotide microarrays, Isolation of RNA, Fluorescent labelling of cRNA, Hybridisation, and Scanning. Kruhøffer M, Magnusson NE, Aaboe M, Dyrskjøt L & Ørntoft TF. Cell Biology 4th edition – a laboratory handbook.
 
 
Contributor(s) Dyrskjot L, Orntoft TF
Submission date Aug 04, 2006
Last update date Jun 15, 2007
Contact name Lars Dyrskjot
E-mail(s) lars@clin.au.dk
Organization name Aarhus University Hospital, Skejby
Department Department of Molecular Medicine
Street address Brendstrupgaardsvej
City Aarhus N
ZIP/Postal code 8200
Country Denmark
 
Samples (808) GSM125379, GSM125380, GSM125381, GSM125382, GSM125383, GSM125384 
Series (1)
GSE5479 Gene expression signatures predict outcome in non-muscle invasive bladder carcinoma - a multi-center validation study

Data table header descriptions
ID
GB_ACC Sequence GenBank accession number used for probe design
SEQUENCE Probe sequence
SPOT_ID Probe type
Project ID Alternative probe ID
ARRAY_ROW Array row
ARRAY_COLUMN Array column
SPOT_ROW Spot row
SPOT_COLUMN spot column

Data table
ID GB_ACC SEQUENCE SPOT_ID Project ID ARRAY_ROW ARRAY_COLUMN SPOT_ROW SPOT_COLUMN
1 --BLANK 1 1 1 1
2 AW772713 CCAGCGCTCTTAACCATCATGTCAGCATTTCCCGAAGTATGTTCCAAAGAACACTAT SEQ487 1 1 1 2
3 AW855393 GAAAATCGGCTGCCTAAACCTCCCTCTGCTTCTACACATATTTAACACACTCTGTCA SEQ489 1 1 1 3
4 AW939074 CTGTGCGGGGTAGGGTGGATTGCTGCAGAGAAGTCGGCACGTGTTAAAGCTAAAATT SEQ491 1 1 1 4
5 BE262478 TCTTCCTGGTTGTCTACAAGGTGTACAAGTATGACCGCGCCTGCCCCGATGGGTTC SEQ493 1 1 1 5
6 NM_004735 ACTGCTTTAAGTTATAGACTGTTACTTGTAGATTTCCATGTAATCATTGAGGTTATCACCCA SEQ495 1 1 1 6
7 NM_000056 GTCATTGATCTGAGGACTATAATACCTTGGGATGTGGACACAATTTGTAAGT SEQ14 1 1 1 7
8 NM_000088 AGACTGTTCTGTTCTGTTCCTTGTGTAACTGTGTTGCTGAAAGACTACCTCGTTCT SEQ16 1 1 1 8
9 NM_000088 GATGGGTGGGGTGGGGAGGGAATCACTGGTGCTATAGAAATTGAGATGCC SEQ18 1 1 1 9
10 NM_000211 CATGGAGACTTGAGGAGGGCTTGAGGTTGGTGAGGTTAGGTGCGTGTTTC SEQ20 1 1 1 10
11 NM_006754 ATCTTATATGTATGGGCATTACCTCTTAGTGATATTTGTTTCCTGTCCTTTGTTG SEQ22 1 1 1 11
12 NM_006754 TTTTCTAAATGACCCGTGGTACTTAATAGGTGTACTAAAATTGTGTTGGGAGCAGGGATTTGGA SEQ24 1 1 1 12
13 AF070613 GCCGATAGCCTAGACCTAGAAGATGACCTTGAGTATGTAAACATTGTCTCCGTGAC SEQ509 1 1 1 13
14 BC001971 GCCCTCCCCAGTCTCTCTTAAAGTTGGAATTTACCAGTTAATTACTCAGCAGAATGG SEQ511 1 1 1 14
15 BC004490 CACTGCCCGAGCTGGTGCATTACAGAGAGGAGAAACACATCTTCCCTAGAGGGTTC SEQ513 1 1 1 15
16 D44466 CCCTACCTGTGTCATTGGCCTTAACAAGGACTTAAAGATGCCGAAAGTTCAGTATAAATCGA SEQ515 1 1 1 16
17 L00058 AAACGATTCCTTCTAACAGAAATGTCCTGAGCAATCACCTATGAACTTGTTTCAAATGC SEQ517 1 1 1 17
18 M24283 TTTCTATCGGCACAAAAGCACTATATGGACTGGTAATGGTTCACAGGTTCAGAGATT SEQ519 1 1 1 18
19 NM_002484 GGGTGGTGGAGAACATGAGTCCGTTCATCTGTCCTAAGTGCAAGAAAGAATCTC SEQ38 1 1 1 19
20 --BLANK 1 1 1 20

Total number of rows: 3072

Table truncated, full table size 244 Kbytes.






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