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Platform GPL4258 Query DataSets for GPL4258
Status Public on Sep 08, 2006
Title JCVI PFGRC Fusobacterium nucleatum 30K v2 array designed primarily based on strain ATCC_25586
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Fusobacterium nucleatum
Manufacturer JCVI PFGRC
Manufacture protocol 2QFN, with arrayer GENETIX, machine cycles 0, pen id 0, pen cycles 0, operator 0, humidity control 0, humidity set point0.000
Support glass
Coating other
 
Description This set includes 4230 oligonucleotides, has 30000 spots distributed in 48 blocks.
 
Web link http://pfgrc.jcvi.org/descriptionPages.shtml
Submission date Sep 01, 2006
Last update date Nov 20, 2007
Contact name PFGRC JCVI
E-mail(s) jli@jcvi.org
Phone 3017957840
Organization name J. Craig Venter Institute
Department PFGRC
Street address 9704 Medical Center Drive
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 

Data table header descriptions
ID
SEQUENCE Oligo sequence
GC% GC content of the sequence
Internal Repeat Score Internal repeat score
Self-Annealing Score Self-anneal score
Primary Strain The strain of primary target
Primary Target Locus primarily hit by the oligo
Common Name of Primary Target Common name of primary target
Gene Symbol Gene symbol
Strain ATCC10953 Target map of strain ATCC10953
Strain ATCC 25586 Target map of strain ATCC 25586

Data table
ID SEQUENCE GC% Internal Repeat Score Self-Annealing Score Primary Strain Primary Target Common Name of Primary Target Gene Symbol Strain ATCC10953 Strain ATCC 25586
2QFN00001_A_1 TACTGGGAAAAAAGCAGAAGGTATGACAAAAGGAATAGGAAATGTCATCTTTATAAAAACAAATGATAAT 28.57 32 66 ATCC 25586 FN1895 FN1895::70::100.0::7.9E-12::+
2QFN00001_A_10 TTATTTTATATGTAAGAAATAGATTTTATAAGTTAAAATTTTTAGGAGAAATACAAGGTGAAAAATGTAG 18.57 35 114 ATCC10953 FNP1530 hypothetical protein FNP1530::70::100.0::2.2E-11::+
2QFN00001_A_11 GTGTCGCCAAGCGGTAAGGCAACGGACTTTGACTCCGTTATGCGTTGGTTCGAATCCAGCCACCCCAGCC 58.57 28 97 ATCC10953 FNPt0022 tRNA-Gln FNPt0012::70::100.0::3.5E-11::+,FNPt0022::70::100.0::3.5E-11::+
2QFN00001_A_12 GAACCGAGTAAATCTTGGCATGTTTGAAGCTGACTTGTCAGCAATCTTAGAAACTTTTAATGAACTTGTT 35.71 30 112 ATCC10953 FNP2111 hypothetical protein FNP2111::70::100.0::2.2E-11::+
2QFN00001_A_13 CTAAACTTAAGAAAAATAACAAACTATTATCTGCAAAAAAGGAAAATACTCTTCATACAAAGGACAAATG 25.71 33 70 ATCC 25586 FN1681 FN1681::70::100.0::3.5E-11::+
2QFN00001_A_14 TGAGAGTAGTTCACCCCTTACTGAAAATAAAACGGGCTATTCTCCTGAAGTATGTTCTATAACATTATAG 35.71 29 82 ATCC10953 FNP0026 hypothetical protein FNP0026::70::100.0::2.2E-11::+
2QFN00001_A_15 ATAGCTCAGTTGGGAGAGCACCTGCCTTACAAGCAGGGGGTCATAGGTTCAAGTCCTATTGTGACCACCA 51.43 30 85 ATCC10953 FNPt0030 tRNA-Val FNPt0002::70::100.0::3.4E-11::+,FNPt0030::70::100.0::3.4E-11::+,FNPt0037::70::100.0::3.4E-11::+
2QFN00001_A_16 TTGAAGTCAACTTGTTGACAAGTTGGCTGAATTTGCAGCGAATTCTTAATTTTTATTTGTTAAGAAATCT 30.0 31 107 ATCC10953 FNP0933 fusobacterial conserved hypothetical protein FNP0933::70::100.0::2.1E-11::+
2QFN00001_A_17 ATAGCTCAGTCGGTAGAGCAGGGGACTGAAAATCCCCGTGTCGGTGGTTCGATTCCGCCTCTGGGCACCA 58.57 29 84 ATCC10953 FNPt0035 tRNA-Phe FNPt0003::70::100.0::3.4E-11::+,FNPt0035::70::100.0::3.4E-11::+
2QFN00001_A_18 TAATATTTCATAGTGACCAAGGTTGGCAATACCAGCATAATTCATATCAGGAGAGGTTAAAAGAAAAGGA 34.29 30 87 ATCC 25586 FN0138 FN0138::70::100.0::2.1E-11::+
2QFN00001_A_19 TTAGCTCAGTTGGTAGAGCACACGACTTTTAATCGTGTTGTCACAAGTTCAAATCTTGTATGACGCACCA 41.43 30 108 ATCC10953 FNPt0014 tRNA-Lys FNPt0008::70::100.0::3.4E-11::+,FNPt0014::70::100.0::3.4E-11::+
2QFN00001_A_2 AAGATGCAAATGCTCAACAAGAAGCAGCAAGTGAAGTAGCAACTCAAGATTATCACATTGGTATTGTTAC 37.14 31 89 ATCC 25586 FN1899 FN1899::70::100.0::2.0E-11::+
2QFN00001_A_20 ACATTAGAAAAATTATTTTCAATATTGTTTAGTCTAAGAAATTATATAGCCAATTTATTTAAAAAACATT 15.71 34 128 ATCC10953 FNP0195 hypothetical protein FNP0195::70::100.0::2.1E-11::+
2QFN00001_A_21 GAATAGCTCAGTTGGTAGAGCGTCAGCCTTCCAAGCTGAATGTCGCGAGTTCGAACCTCGTTTCCCGCTC 54.29 30 94 ATCC10953 FNPt0016 tRNA-Gly FNPt0009::70::100.0::3.4E-11::+,FNPt0016::70::100.0::3.4E-11::+,FNPt0033::70::100.0::3.4E-11::+
2QFN00001_A_22 AAAAATAACAAGAAAATTAATAATCACAGCTACTATATTGGCTGGATTAGGAGTATTAAACAAAACATTT 24.29 33 119 ATCC10953 FNP1037 hypothetical protein FNP1037::70::100.0::2.1E-11::+
2QFN00001_A_23 AATATTTAGATATGATATTCCTGTTCTTACAATACTTTTCATAATTGCACTTTGTTTCTTTGTTATTTGG 24.29 31 76 ATCC 25586 FN1896 FN1896::70::100.0::1.6E-11::+
2QFN00001_A_24 AAATTGGGGTTATTGTGAATAAAACAACAGAGCTTAGACCAATTTTAATGGGACTTACACTTTCTGTTAT 31.43 30 96 ATCC 25586 FN1900 FN1900::70::100.0::1.5E-11::+
2QFN00001_A_3 ACGTCGCCAAGCGGTAAGGCAGAGGTCTGCAAAATCTCCATCACCAGTTCGAATCTGGTCGTCGCCTCCA 55.71 30 92 ATCC10953 FNPt0034 tRNA-Cys FNPt0034::70::100.0::3.5E-11::+
2QFN00001_A_4 GGAGCTTCAAGCTCCTTTTTTATTAAATTCATCTTTTCAAGTTTTCTTATTAACTTTAAAAAATTTACAT 22.86 34 126 ATCC10953 FNP0828 hypothetical protein FNP0828::70::100.0::2.2E-11::+
2QFN00001_A_5 GGAAAGAATAGCAAGTTTTCAAGTTGATCATAAAAAATTAAATAGAGGAATTTATGTGTCAAGACTTGAT 27.14 31 116 ATCC10953 FNP0947 hypothetical protein FNP0947::70::100.0::3.5E-11::+

Total number of rows: 4730

Table truncated, full table size 788 Kbytes.




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