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Platform GPL4265 Query DataSets for GPL4265
Status Public on Sep 08, 2006
Title JCVI PFGRC Helicobacter pylori 13K v2.1 array designed primarily based on strain J99
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Helicobacter pylori
Manufacturer JCVI PFGRC
Manufacture protocol 2QHP, with arrayer LUCIDEA, mode Normal, replicates 4, repeats 1, slide_dips 38, machine cycles 5881667, pen id 0, pen cycles -1, operator Jon, humidity control On, humidity set point65
Support glass
Coating Epoxy
 
Description This set includes 2571 oligonucleotides, has 13824 spots distributed in 96 blocks.
 
Web link http://pfgrc.jcvi.org/descriptionPages.shtml
Submission date Sep 05, 2006
Last update date Nov 20, 2007
Contact name PFGRC JCVI
E-mail(s) jli@jcvi.org
Phone 3017957840
Organization name J. Craig Venter Institute
Department PFGRC
Street address 9704 Medical Center Drive
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 

Data table header descriptions
ID
SEQUENCE Oligo sequence
GC% GC content of the sequence
Internal Repeat Score Internal repeat score
Self-Annealing Score Self-anneal score
Primary Strain The strain of primary target
Primary Target Locus primarily hit by the oligo
Common Name of Primary Target Common name of primary target
Gene Symbol Gene symbol
Strain 26695 Target map of strain 26695
Strain J99 Target map of strain J99

Data table
ID SEQUENCE GC% Internal Repeat Score Self-Annealing Score Primary Strain Primary Target Common Name of Primary Target Gene Symbol Strain 26695 Strain J99
2HP00001_A_1 GCTTATTCCTTTTTATTTTAGATTTTTGGATTATAGCTTAAAAAAAGGTTTAGTAAAAGTCATAAATAGG 22.86 34 144 26695 HP1528 hypothetical protein HP1528::70::100.0::2.4E-11::+
2HP00001_A_10 TATACGATGAATTGAGCGCTAAAGATAAGGGTATTCAAGGTCTTTATGACAAAATCTCTGATTTGTTGTC 34.29 30 74 26695 HP0385 hypothetical protein HP0385::70::100.0::8.1E-12::+ jhp0996::70::97.14286::5.3E-11::+
2HP00001_A_11 GAAAACAAACAAAAAATCTCGGTGCAACTAACAAAATTCAGTTTGAAAAATATTTGTCTCAATCAGAGAC 30.0 32 98 26695 HP0533 hypothetical protein HP0533::70::100.0::2.1E-11::+
2HP00001_A_12 TATCAAATTAAAGGATTTTACAATGATTAATGCCGTTTCTTCTCTTGCTCCGGTGCAGTCTTTGGGGAAT 37.14 29 77 26695 HP1122 hypothetical protein HP1122::70::100.0::8.1E-12::+
2HP00001_A_13 GTAACACAAGGCATTGCTAACGACTTTTTTGCCCTAACAAACACGATATTTTCTATCCTAAAAATAAGAA 32.86 32 66 26695 HP0698 hypothetical protein HP0698::70::100.0::2.1E-11::+
2HP00001_A_14 TCACTCGTATCGGGAGAAAGAAAAAGCCTTTTTACAGAGTGGTGGTAACCGATTCTAGGAAAAGAAGGGA 42.86 30 94 26695 HP1151 ribosomal protein S16 rpS16 HP1151::70::100.0::8.1E-12::+ jhp1078::70::92.85714::8.7E-10::+
2HP00001_A_15 TGGTCTCGTATTCTTTTGTCAATCTTGGTGGTGGTTTTGGGATTAGCGCTTACTGCCATGCTCATAAATT 41.43 30 69 26695 HP1239 hypothetical protein HP1239::70::100.0::2.1E-11::+
2HP00001_A_16 TAAAAGCGAATAATCCGCATTTTGATAAGATTTTTGAGAAACACAACCAGCTTGATGACGACATCAAAAC 34.29 31 85 26695 HP1242 conserved hypothetical protein HP1242::70::100.0::8.1E-12::+ jhp1163::70::98.57143::2.1E-11::+
2HP00001_A_17 AACGCTCTTGGAAACTATTATACCTTGAAATTTCTTTTTCTTGGTTTAAGGTAGTGTTTTTGATGAAACG 31.43 32 94 26695 HP0024 hypothetical protein HP0024::70::100.0::2.0E-11::+
2HP00001_A_18 CGGGTATTTTTGAACGCTTAGAAGAATTGATTGAAAAAGAAATGCAACCTAATGAAGTCGCTATTTTCAT 32.86 31 78 26695 HP1264 hypothetical protein HP1264::70::100.0::8.1E-12::+ jhp1185::70::97.14286::5.3E-11::+
2HP00001_A_19 AATTGGTAGACGCACTAGACTTAGGATCTAGCGCCGCAAGGCATGAAGGTTCGATTCCTTTCTTCCGCAC 50.0 29 77 26695 HP0365 hypothetical protein HP0365::70::100.0::2.0E-11::+
2HP00001_A_2 TTAATGATCATTTAATAGACAATTTAAACACGCCTTTAAAAGATGGCGATGTAATAAGTTTGTTGCCACC 31.43 32 100 26695 HP0801 molybdopterin converting factor, subunit 1 moaD HP0801::70::100.0::8.3E-12::+
2HP00001_A_20 ATTGATGATAACATCCACATTAAAGTCATTTCCATAGATAGAGGGAGTGTGCGTTTAGGGTTTGAAGCGC 40.0 29 57 26695 HP1442 carbon storage regulator csrA HP1442::70::100.0::8.1E-12::+ jhp1335::70::92.85714::8.7E-10::+
2HP00001_A_21 TGAAGTTTTACAAAAAAGAGTTTTTAAACAACAACTATTATTAACTTTTTACAAAAGAACACACAAAGGC 24.29 34 102 26695 HP0461 hypothetical protein HP0461::70::100.0::2.0E-11::+
2HP00001_A_22 CGCAACAGACCGATTGAAATTGATTCTAGCCAAAGAGCGCACTTTAAATTTACCCTACATGGAAGAAATG 40.0 31 89 26695 HP0332 cell division topological specificity factor minE HP0332::70::100.0::8.0E-12::+ jhp0315::70::91.42857::2.2E-9::+
2HP00001_A_23 ATAGTAAATACTCTTGGGAAACATTATACCTTAAAATTAGTTTTTTAGGGTTTTGTTTGGAATTAAAAAT 22.86 34 110 26695 HP1515 hypothetical protein HP1515::70::100.0::2.0E-11::+
2HP00001_A_24 CATAGCCATTAAGGATAATGTGGTGCTTTTGGAAACTTTGGGCGTTCAAAGAGAGGCGAGCTTGGATTTA 42.86 29 83 26695 HP0899 hydrogenase expression-formation protein hypC HP0899::70::100.0::8.0E-12::+ jhp0836::70::90.0::5.5E-9::+
2HP00001_A_3 GATTATTTACTTAATATTGTTTCTCATTGTAATTTATTTGTTGTATAGGATTTTAGATGTTTTGGAGCAA 22.86 33 61 J99 jhp0507 hypothetical protein HP0560::70::100.0::2.3E-11::+ jhp0507::70::100.0::2.3E-11::+
2HP00001_A_4 TTGAAAAATGGGGCTTATGGAATCAAATGGTTTGAAAATGTTGTAGCGTGGGTTAATGAAAGGGGGAATA 37.14 32 60 J99 jhp0953 hypothetical protein jhp0953::70::100.0::8.3E-12::+
2HP00001_A_5 TAATGGTAGATTTATCAAAAAAGTAGAAAACAGCATAGAGTTATTGCAACTCAATGACAACCCAAAAGCT 31.43 30 84 J99 jhp1393 hypothetical protein jhp1393::70::100.0::2.3E-11::+

Total number of rows: 3072

Table truncated, full table size 511 Kbytes.




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