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Platform GPL4296 Query DataSets for GPL4296
Status Public on Sep 13, 2006
Title JCVI PFGRC Neisseria gonorrhoeae 14K v1 array designed primarily based on strain FA1090
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Neisseria gonorrhoeae
Manufacturer JCVI PFGRC
Manufacture protocol QNG, with arrayer LUCIDEA, mode Normal, replicates 2, repeats 1, slide_dips -1, machine cycles 993646, pen id 10164, pen cycles -1, operator Shamria/Robin, humidity control On, humidity set point65
Support glass
Coating Epoxy
 
Description This set includes 5387 oligonucleotides, has 14688 spots distributed in 48 blocks.
 
Web link http://pfgrc.jcvi.org/descriptionPages.shtml
Submission date Sep 11, 2006
Last update date Nov 20, 2007
Contact name PFGRC JCVI
E-mail(s) jli@jcvi.org
Phone 3017957840
Organization name J. Craig Venter Institute
Department PFGRC
Street address 9704 Medical Center Drive
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 

Data table header descriptions
ID
SEQUENCE Oligo sequence
GC% GC content of the sequence
Internal Repeat Score Internal repeat score
Self-Annealing Score Self-anneal score
Primary Strain The strain of primary target
Primary Target Locus primarily hit by the oligo
Common Name of Primary Target Common name of primary target
Gene Symbol Gene symbol
Strain FA 1090 Target map of strain FA 1090
Strain MC58 Target map of strain MC58
Strain Z2491 Target map of strain Z2491

Data table
ID SEQUENCE GC% Internal Repeat Score Self-Annealing Score Primary Strain Primary Target Common Name of Primary Target Gene Symbol Strain FA 1090 Strain MC58 Strain Z2491
QNG00001_A_1 TATTACGAACAATGCAAAAACATCAGCCAAACCGCAGCAACGTTTAACTTGTCAAGAAACACGCTTTACC 40.0 32 69 MC58 NMB1386 putative transposase NGO0883::70::95.71428::1.7E-10::+ NMB1386::70::100.0::7.4E-12::+,NMB1736::70::98.57143::3.5E-11::+ NMA1601c::70::100.0::6.6E-12::+,NMA1992::70::100.0::1.0E-11::+,NMA1212::70::100.0::1.3E-11::+,NMA1601::70::100.0::4.5E-11::+
QNG00001_A_10 TGTGACCGGCTGGTTTGTGTTATGCCGTCTGAACGTTCGGACGGCATTTTTACTTTTGGAAAATATATTA 41.43 31 117 Obsolete Obsolete Obsolete
QNG00001_A_11 ATGAGGCATCTGAAATCTGCCTGCAGGCAGATTTCAAAATGCAAAAGCCGTCTGAAGGCAAAGAACGTGC 47.14 30 150 MC58 NMB0953 hypothetical protein NMB0953::70::100.0::4.0E-11::+
QNG00001_A_12 TGTGTGCCGTTCGCAGGAAATGGAACGGCAATATCAATAATGTAAAGAAAATAAAAAAACCAATCCAAAA 34.29 32 67 Obsolete Obsolete Obsolete
QNG00001_A_13 TGAGTAACGATGAAAATTTACTTTTTTCTCAACCACACTTAACAAAGGTGAATATTATGCAAGTTTTGAC 30.0 30 87 MC58 NMB0093 hypothetical protein NMB0093::70::100.0::3.9E-11::+
QNG00001_A_14 CAGCGTGCAACTTGCCGCACCAAAATATCCAAATTGAACATACGGCGGCGTACCGGGATTTGCGCCGCCG 57.14 30 94 Obsolete Obsolete Obsolete
QNG00001_A_15 ATGGGTGTTTTCGATATTTTACCGTCAGGATTGGTATGTTTATTTGAATATGATTTTCTGTGGTCGGGAC 37.14 34 70 Z2491 NMA0953 hypothetical protein NMA0953::70::100.0::3.7E-11::+
QNG00001_A_16 ATACGGCCGAAAATCTCAGGTTCAAGGACAGATAGGGTCATCCGCGCACAGGTGCGCGGGCGGCATCTGA 58.57 30 99 Obsolete Obsolete Obsolete
QNG00001_A_17 TCGGGATTTGTGCCTTATGCCCGCATCAAACAGTGCAGGGATGCGGGCGCACAAAACGTTAAACGCCGAA 54.29 30 161 MC58 NMB1491 hypothetical protein NMB1491::70::100.0::3.7E-11::+
QNG00001_A_18 ATGATGTTCATGGTTTCTCGATGTCTCTGTATTTATAGCGGATTAACAAAAACCGGTACGGCGTTGCCCC 44.29 29 64 Obsolete Obsolete Obsolete
QNG00001_A_19 ACTTTTGTGGCAAAACATAAGCACTTCACGAAGAGAACTTACCAAACTGTTTTTATATAAAAACTTGGGG 34.29 30 117 MC58 NMB0968 hypothetical protein NGO1201::70::97.14286::2.0E-10::+ NMB0968::70::100.0::3.7E-11::+ NMA1165::70::100.0::3.2E-11::+
QNG00001_A_2 TCAGACGGCCTTCGCGGAAGGTGTAATGCGGACTTTGGTTTTGTTGCATGAAAAAGGGTTAATCAAGCTA 45.71 29 67 Obsolete Obsolete Obsolete
QNG00001_A_20 ATGAAATCAATTTTAATCCGCCATATTCTACTGATTTGTTTGAATTCGGTGTATTATGCCGTTTCTCAAC 32.86 32 86 Obsolete Obsolete Obsolete
QNG00001_A_21 ATGCTTGCAACGCATTCCAACCCCGAAACAGCATACTCGGACACACACCATTGCCGGTTTTCCCTGCTTT 51.43 30 71 MC58 NMB2097 hypothetical protein NMB2097::70::100.0::3.7E-11::+
QNG00001_A_22 TTTGTTTTCATATCATATCCTTACAGGCACGCCGCAAACTGCCGAACTTCATCCGTTGTCATATCGGCAG 45.71 29 67 Obsolete Obsolete Obsolete
QNG00001_A_23 TGGCAATGCAGAATTTGGAAGCGGAATTTGCCATGCCTGTCCGAAACGTGTTGGCAGGCAGCCGGCAGCA 55.71 32 109 Obsolete Obsolete Obsolete NGO0350::70::100.0::1.6E-11::- NMB0772::70::100.0::1.6E-11::-
QNG00001_A_24 ATCCACTATATTTGGGAGGGGTGTAACCCCTTCCAAATCAGGACGGCACATAGGGCGGTGCTTTATGTGT 50.0 30 136 Obsolete Obsolete Obsolete
QNG00001_A_3 ATGAAAGTGAAGGCATATATCAGTATTTTTTATACGCCAACAGAAAAGAATACGATGAACTGTTTGTTGG 32.86 32 100 MC58 NMB0362 hypothetical protein NMB0362::70::100.0::4.2E-11::+
QNG00001_A_4 ATGGTGTCAAAATCAGGCTTTCAAAACAACCTTTGAAAGGCAGAACCATGAACAAGCCGTTTATCACGCA 41.43 31 108 Obsolete Obsolete Obsolete NMB1629::67::94.02985::1.9E-9::+
QNG00001_A_5 GATAAGCAGCCGTTAATTACAGGTCGTCTGAAAAACAAAAAGCAGCCTGCACAAGCTATTTTCTTTTTCC 40.0 29 110 Obsolete Obsolete Obsolete

Total number of rows: 6889

Table truncated, full table size 1275 Kbytes.




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