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Platform GPL4324 Query DataSets for GPL4324
Status Public on Sep 15, 2006
Title JCVI PFGRC Staphylococcus aureus 22K v4.1 array designed primarily based on strain N315 [FULL_FEATURE_LAYOUT]
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Staphylococcus aureus
Manufacturer TIGR PFGRC
Manufacture protocol 4QSA, with arrayer LUCIDEA, mode Normal, replicates 4, repeats 1, slide_dips 38, machine cycles 1785606, pen id 0, pen cycles -1, operator Jon, humidity control On, humidity set point65
Coating Epoxy
 
Description This set includes 4531 oligonucleotides, has 22080 spots distributed in 96 blocks.
 
Web link http://pfgrc.tigr.org/descriptionPages.shtml
Submission date Sep 14, 2006
Last update date Nov 20, 2007
Contact name PFGRC JCVI
E-mail(s) jli@jcvi.org
Phone 3017957840
Organization name J. Craig Venter Institute
Department PFGRC
Street address 9704 Medical Center Drive
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Samples (13) GSM143514, GSM143527, GSM143528, GSM143529, GSM143530, GSM143531 
Series (1)
GSE6258 Microarray analysis of the effect of Cipro on wt and lexA mutant S. aureus cells

Data table header descriptions
ID Unique identification of each spot
Row Row of slide
Column Colunm of slide
Meta Row Meta row of slide
Meta Column Meta colunm of slide
Sub Row Row of block
Sub Column Colunm of block
Oligo ID Oligo identification
SEQUENCE Oligo sequence
GC% GC content of the sequence
Internal Repeat Score Internal repeat score
Self-Annealing Score Self-anneal score
Primary Strain The strain of primary target
Primary Target Locus primarily hit by the oligo
Common Name of Primary Target Common name of primary target
Gene Symbol Gene symbol
Strain MRSA252 Target map of strain MRSA252
Strain MSSA476 Target map of strain MSSA476
Strain Mu50 Target map of strain Mu50
Strain MW2 Target map of strain MW2
Strain N315 Target map of strain N315
Strain pLW043 Target map of strain pLW043
Strain COL Target map of strain COL
ORF Locus primarily hit by the oligo
SPOT_ID spot identifier

Data table
ID Row Column Meta Row Meta Column Sub Row Sub Column Oligo ID SEQUENCE GC% Internal Repeat Score Self-Annealing Score Primary Strain Primary Target Common Name of Primary Target Gene Symbol Strain MRSA252 Strain MSSA476 Strain Mu50 Strain MW2 Strain N315 Strain pLW043 Strain COL ORF SPOT_ID
1 1 1 1 1 1 1 4SA00001_C_1 TATATTGACTGCGGGGACCCAACACAGAGAATTTCTAAAAGAAATTCTACAGGCAATGCACGTTTATGTT 38.57 30 106 N315 SAS024 hypothetical protein SAR0936::64::93.75::6.9E-8::+ SAS0843::70::100.0::9.8E-11::+ SAV0973::70::100.0::9.8E-11::+ MW0855::70::100.0::9.8E-11::+ SAS024::70::100.0::9.8E-11::+ SAS024
2 1 2 1 1 1 2 4SA00001_G_1 TTTTTAGCATTAAAGTTATAGATTTGGGTAAACAATTACCAATTGGAAACATATATCACGTTACGATGGG 30.0 31 120 COL SACOL1463 hypothetical protein SACOL1463::70::100.0::9.5E-11::+ SACOL1463
3 1 3 1 1 1 3 4SA00001_K_1 ATATGAAGGACGTACAAAACAAGAAACAGGGCACCCACCTGTATATAACAGGCCGAATGATCAAGCTATT 41.43 29 78 N315 SAS050 hypothetical protein SAR1709::70::100.0::8.9E-11::+ SAS1565::70::100.0::8.9E-11::+ SAV1629::70::100.0::8.9E-11::+ MW1579::70::100.0::8.9E-11::+ SAS050::70::100.0::8.9E-11::+ SAS050
4 1 4 1 1 1 4 4SA00001_O_1 CAATTTATTATGTAATTAATTATAGCATTGATGAACAAGGTGTGCAATGTATTTTTGTAATATTACAATA 21.43 34 126 MSSA476 SAS2320a hypothetical protein SAR2519a::70::97.14286::5.5E-10::+ SAS2320a::70::100.0::8.4E-11::+ MW2353::70::100.0::8.4E-11::+ SACOL2432::70::98.57143::2.1E-10::+ SAS2320a
5 1 5 1 1 1 5 4SA00001_D_1 ACATGATAGTGTGAAATTAGGCACAAGTATCGTAGACATCGTTGCTAACGGTGTGGGTTTACTAGGTAAA 40.0 28 78 COL SACOL1187 antibacterial protein phenol soluble modulin SAS1108::70::100.0::6.7E-11::+ MW1057::70::100.0::6.7E-11::+ SACOL1187::70::100.0::6.7E-11::+ SACOL1187
6 1 6 1 1 1 6 4SA00001_H_1 ATTAGCTAAAGCAATCGGAATTGTCGGTGGCGTAAACGCTTGCAGCAGTTTATTTGATGAACCTAAAGTA 40.0 29 97 N315 SAS066 AgrD protein agrD SAV2037::70::100.0::6.3E-11::+ SAS066::70::100.0::6.3E-11::+ SAS066
7 1 7 1 1 1 7 4SA00001_L_1 TACGAGTTAGGTAAGTATGTAACTGAGCAAGTATATATTATGATGACAGCTAATGATGATGTAGAGGCGC 37.14 32 80 N315 SAS062 hypothetical protein SAR2069::70::97.14286::3.9E-10::+,SAR2031::70::97.14286::8.8E-10::-,SAR1527::70::92.85714::6.4E-9::+,SAR1563::70::92.85714::1.5E-8::+ SAS1899::70::98.57143::1.5E-10::+,SAS1862::70::98.57143::3.4E-10::-,SAS0923::70::95.71428::9.9E-10::+ SAV1971::70::100.0::5.9E-11::+,SAV0882::70::92.85714::5.6E-9::+ MW1916::70::98.57143::1.5E-10::+,MW1411::70::95.71428::9.7E-10::+ SAS062::70::100.0::6.1E-11::+ SACOL0361::70::95.71428::9.9E-10::+ SAS062
8 1 8 1 1 1 8 4SA00001_P_1 TTGGATATAAACGATTAAGTAAAATGCTTTTTCAGTTTGAAATTAATCATATAAATTTCTTATGGGAGGG 25.71 31 107 COL SACOL0853 hypothetical protein SACOL0853::70::100.0::5.8E-11::+ SACOL0853
9 1 9 1 1 1 9 4SA00001_C_13 TACCAATGAAGTTTCAAAAGAACAATTCCAAGAAATTGAGAATGTAAATAATAAGGTCAAAGAATTTTAT 24.29 34 71 COL SACOL0057 hypothetical protein SACOL0057::70::100.0::9.8E-11::+ SACOL0057
10 1 10 1 1 1 10 4SA00001_G_13 TGTTCAGCATCATATTTGTATCTATAGTAGCTCCTATTATAGTAGGGGTTATAATCACGTTGTTTTCACA 32.86 31 94 Mu50 SAVP009 hypothetical protein SAVP009::70::100.0::9.2E-11::+ SAVP009
11 1 11 1 2 1 1 4SA00001_C_1 TATATTGACTGCGGGGACCCAACACAGAGAATTTCTAAAAGAAATTCTACAGGCAATGCACGTTTATGTT 38.57 30 106 N315 SAS024 hypothetical protein SAR0936::64::93.75::6.9E-8::+ SAS0843::70::100.0::9.8E-11::+ SAV0973::70::100.0::9.8E-11::+ MW0855::70::100.0::9.8E-11::+ SAS024::70::100.0::9.8E-11::+ SAS024
12 1 12 1 2 1 2 4SA00001_G_1 TTTTTAGCATTAAAGTTATAGATTTGGGTAAACAATTACCAATTGGAAACATATATCACGTTACGATGGG 30.0 31 120 COL SACOL1463 hypothetical protein SACOL1463::70::100.0::9.5E-11::+ SACOL1463
13 1 13 1 2 1 3 4SA00001_K_1 ATATGAAGGACGTACAAAACAAGAAACAGGGCACCCACCTGTATATAACAGGCCGAATGATCAAGCTATT 41.43 29 78 N315 SAS050 hypothetical protein SAR1709::70::100.0::8.9E-11::+ SAS1565::70::100.0::8.9E-11::+ SAV1629::70::100.0::8.9E-11::+ MW1579::70::100.0::8.9E-11::+ SAS050::70::100.0::8.9E-11::+ SAS050
14 1 14 1 2 1 4 4SA00001_O_1 CAATTTATTATGTAATTAATTATAGCATTGATGAACAAGGTGTGCAATGTATTTTTGTAATATTACAATA 21.43 34 126 MSSA476 SAS2320a hypothetical protein SAR2519a::70::97.14286::5.5E-10::+ SAS2320a::70::100.0::8.4E-11::+ MW2353::70::100.0::8.4E-11::+ SACOL2432::70::98.57143::2.1E-10::+ SAS2320a
15 1 15 1 2 1 5 4SA00001_D_1 ACATGATAGTGTGAAATTAGGCACAAGTATCGTAGACATCGTTGCTAACGGTGTGGGTTTACTAGGTAAA 40.0 28 78 COL SACOL1187 antibacterial protein phenol soluble modulin SAS1108::70::100.0::6.7E-11::+ MW1057::70::100.0::6.7E-11::+ SACOL1187::70::100.0::6.7E-11::+ SACOL1187
16 1 16 1 2 1 6 4SA00001_H_1 ATTAGCTAAAGCAATCGGAATTGTCGGTGGCGTAAACGCTTGCAGCAGTTTATTTGATGAACCTAAAGTA 40.0 29 97 N315 SAS066 AgrD protein agrD SAV2037::70::100.0::6.3E-11::+ SAS066::70::100.0::6.3E-11::+ SAS066
17 1 17 1 2 1 7 4SA00001_L_1 TACGAGTTAGGTAAGTATGTAACTGAGCAAGTATATATTATGATGACAGCTAATGATGATGTAGAGGCGC 37.14 32 80 N315 SAS062 hypothetical protein SAR2069::70::97.14286::3.9E-10::+,SAR2031::70::97.14286::8.8E-10::-,SAR1527::70::92.85714::6.4E-9::+,SAR1563::70::92.85714::1.5E-8::+ SAS1899::70::98.57143::1.5E-10::+,SAS1862::70::98.57143::3.4E-10::-,SAS0923::70::95.71428::9.9E-10::+ SAV1971::70::100.0::5.9E-11::+,SAV0882::70::92.85714::5.6E-9::+ MW1916::70::98.57143::1.5E-10::+,MW1411::70::95.71428::9.7E-10::+ SAS062::70::100.0::6.1E-11::+ SACOL0361::70::95.71428::9.9E-10::+ SAS062
18 1 18 1 2 1 8 4SA00001_P_1 TTGGATATAAACGATTAAGTAAAATGCTTTTTCAGTTTGAAATTAATCATATAAATTTCTTATGGGAGGG 25.71 31 107 COL SACOL0853 hypothetical protein SACOL0853::70::100.0::5.8E-11::+ SACOL0853
19 1 19 1 2 1 9 4SA00001_C_13 TACCAATGAAGTTTCAAAAGAACAATTCCAAGAAATTGAGAATGTAAATAATAAGGTCAAAGAATTTTAT 24.29 34 71 COL SACOL0057 hypothetical protein SACOL0057::70::100.0::9.8E-11::+ SACOL0057
20 1 20 1 2 1 10 4SA00001_G_13 TGTTCAGCATCATATTTGTATCTATAGTAGCTCCTATTATAGTAGGGGTTATAATCACGTTGTTTTCACA 32.86 31 94 Mu50 SAVP009 hypothetical protein SAVP009::70::100.0::9.2E-11::+ SAVP009

Total number of rows: 22080

Table truncated, full table size 5986 Kbytes.






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