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Platform GPL4352 Query DataSets for GPL4352
Status Public on Sep 21, 2006
Title JCVI PFGRC Trypanosoma brucei 37K v2 array designed primarily based on strain TREU927
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Trypanosoma brucei
Manufacturer JCVI PFGRC
Manufacture protocol 2QTB, with arrayer GENETIX, machine cycles 0, pen id 0, pen cycles 0, operator 0, humidity control 0, humidity set point0.000
Support glass
Coating Epoxy
 
Description This set includes 8381 oligonucleotides, has 37632 spots distributed in 48 blocks.
 
Web link http://pfgrc.jcvi.org/descriptionPages.shtml
Submission date Sep 20, 2006
Last update date Nov 20, 2007
Contact name PFGRC JCVI
E-mail(s) jli@jcvi.org
Phone 3017957840
Organization name J. Craig Venter Institute
Department PFGRC
Street address 9704 Medical Center Drive
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 

Data table header descriptions
ID
SEQUENCE Oligo sequence
GC% GC content of the sequence
Internal Repeat Score Internal repeat score
Self-Annealing Score Self-anneal score
Primary Strain The strain of primary target
Primary Target Locus primarily hit by the oligo
Common Name of Primary Target Common name of primary target
Gene Symbol Gene symbol
Strain TREU927 Target map of strain TREU927

Data table
ID SEQUENCE GC% Internal Repeat Score Self-Annealing Score Primary Strain Primary Target Common Name of Primary Target Gene Symbol Strain TREU927
2QTB00001_A_1 TGCGGCGGTTAGTGCAGGAAAGGGACGTGGTAATTCACTTGAGTGCCGGAGGTGAGGGAAGGGAAGTGGA 57.14 32 58 Obsolete Obsolete Obsolete
2QTB00001_A_10 GCTACGCGATCCATTTCTCATTTCTTTTCCGTTCTTTACTGCTTCTGACACTTCATATACCATAAAATAT 35.71 31 58 TREU927 Tb09.160.2720 Tb09.160.2720::70::100.0::6.0E-11::+
2QTB00001_A_11 AAAACATCTCGTCGCCAAGCTAACAAATCGTTTTGCCCGCGAAAGAAGCTGGGTGCTTGCCAAGTCCCAG 51.43 29 92 TREU927 Tb927.1.5150 Tb927.1.5150::70::100.0::9.4E-11::+
2QTB00001_A_12 TGTGCTGGGAATGCGCCGAATGCGTTAGAAGATGACTCAGTTAAAGCAGAATGGGGGGAAAATTTAAAAA 42.86 30 66 TREU927 Tb09.160.2920 Tb09.160.2920::70::100.0::6.0E-11::+
2QTB00001_A_13 AAGAGGGAGGAAGAAAAAAATGTAGCTGTAATATGTGTAGCTTCACCTGCAAATATGAAGATTGGTATTA 34.29 29 80 Obsolete Obsolete Obsolete
2QTB00001_A_14 TCCTCACCCAAGAATCCTGGTGCCTGTTCTCGACTCAAGCCTGGTTGTCGCGGGCCATCCGCAGCGGCAT 61.43 30 78 TREU927 Tb10.61.0130 Tb10.61.0130::70::100.0::6.0E-11::+
2QTB00001_A_15 TATGTCAACGCAAGTAGATTTGGCACCCTCTTTCAACGTCATATCACCACTGCCAAAAAGGTTTTACGGT 42.86 29 76 TREU927 Tb09.160.3640 Tb09.160.3640::70::100.0::9.1E-11::+
2QTB00001_A_16 ATGGGAAAACAAGAATTTTATCCACACAACCTTATGGCTCCACTATTTTCCCCCTCCCCAGCCTCGCGCA 48.57 31 84 TREU927 Tb09.160.1810 Tb09.160.1810::70::100.0::5.9E-11::+
2QTB00001_A_17 TACCCTGCGCGCCCTTCTTCCTTTCCTTTTCACTTACCCCTATTTGATGATTGTGGATTTTTCTTTCCAA 42.86 32 30 TREU927 Tb09.160.3750 Tb09.160.3750::70::100.0::8.8E-11::+
2QTB00001_A_18 TTTACCAAGCTAGTTGTGATACGCCGCGTATCGTTAAGTGGCGAAGGAGGAAGAAGGAACGAAAGCGAAA 47.14 29 78 TREU927 Tb09.160.4230 Tb09.160.4230::70::100.0::5.9E-11::+
2QTB00001_A_19 TATGTCACTCCCTCCCGTTTTCTTTTCCTCACAAATGCCTTTGTTCCACAGCTCAGATTTATATTTATTT 37.14 31 57 TREU927 Tb09.160.3790 Tb09.160.3790::70::100.0::8.8E-11::+
2QTB00001_A_2 GTGGCTTCACAGCTCGACTAAACGCAGAAAATAAAAACACCGCCGGAAAGACCCACGAAACTGTGTGTTA 47.14 29 57 TREU927 Tb09.160.4980 Tb09.160.4980::70::100.0::6.1E-11::+
2QTB00001_A_20 GAAGAGTGAGGAAGTCCGTGAGAAACAACGATGCTACATGGTTATGCTGTTTGCGCGTAATGAAGAATTT 42.86 29 88 Obsolete Obsolete Obsolete
2QTB00001_A_21 TATAGTTGCCGTGACTTTATTCTTTGTTTGTGGTGGTGGTGTGTGTTTGCACATCTCTCCTTCATTTATT 38.57 33 42 TREU927 Tb09.160.3940 Tb09.160.3940::70::100.0::8.8E-11::+
2QTB00001_A_22 GAGGCAGGAACTCTTGTTTGTTTATGGGTGTTAATTGTTACCTTCAGTGTCCAAGCATGCAACTAGTGAA 41.43 29 77 TREU927 Tb927.1.3090 unlikely gene predicted by glimmer Tb927.1.3090::70::100.0::5.9E-11::+
2QTB00001_A_23 AAGAAACCAAAGGCTCACGGAAGGGAACAAATATATTTGTGGGAATAATAATTCAACATTAGGCCTCTTT 35.71 29 113 Obsolete Obsolete Obsolete
2QTB00001_A_24 TGTTCATGTTTCATTTACCTTCTTTTCTCGTTGGCGTTTGCTTCTCTTTGTATGTTTTCGTTCCGAGGAA 38.57 31 41 TREU927 Tb927.1.3900 unlikely gene predicted by glimmer Tb927.1.3900::70::100.0::5.9E-11::+
2QTB00001_A_3 TTGATGCACCTTTTAGTGGGAGAAAGAAAAAAGAGTAAGAAAAAATATGGTGATGTAGCGTCACAGTCTA 35.71 31 56 TREU927 Tb09.160.1340 Tb09.160.1340::70::100.0::9.4E-11::+
2QTB00001_A_4 GAAGAGGAACTTTCAGGGTTGTTTTAATTTCGTTGCATCATGCCGCGTCACGCGTCCTCCTATCATCAAT 45.71 29 81 TREU927 Tb09.v1.0200 Tb09.v1.0200::70::100.0::6.1E-11::+
2QTB00001_A_5 AGTGAGGAGGCGGTTAAAACAGTGACAAATAGCGAAATTGCGACGAAGAAAAAGCGTGCGAAGGTGCTAG 47.14 33 41 TREU927 Tb09.160.2120 Tb09.160.2120::70::100.0::9.4E-11::+

Total number of rows: 9094

Table truncated, full table size 1803 Kbytes.




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