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Platform GPL4354 Query DataSets for GPL4354
Status Public on Sep 21, 2006
Title JCVI PFGRC Trypanosoma cruzi 26K v1 array designed primarily based on strain CL Brener
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Trypanosoma cruzi
Manufacturer JCVI PFGRC
Manufacture protocol QTC, with arrayer GENETIX, machine cycles 0, pen id 0, pen cycles 0, operator 0, humidity control 0, humidity set point0.000
Support glass
Coating aminosilane
 
Description This set includes 11141 oligonucleotides, has 26496 spots distributed in 48 blocks.
 
Web link http://pfgrc.jcvi.org/descriptionPages.shtml
Submission date Sep 20, 2006
Last update date Nov 20, 2007
Contact name PFGRC JCVI
E-mail(s) jli@jcvi.org
Phone 3017957840
Organization name J. Craig Venter Institute
Department PFGRC
Street address 9704 Medical Center Drive
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 

Data table header descriptions
ID
SEQUENCE Oligo sequence
GC% GC content of the sequence
Internal Repeat Score Internal repeat score
Self-Annealing Score The strain of primary target
Primary Strain The strain of primary target
Primary Target Locus primarily hit by the oligo
Common Name of Primary Target Common name of primary target
Gene Symbol Gene symbol
Strain CL Brener Target map of strain CL Brener

Data table
ID SEQUENCE GC% Internal Repeat Score Self-Annealing Score Primary Strain Primary Target Common Name of Primary Target Gene Symbol Strain CL Brener
QTC00001_A_1 CTGGGAAGAGACACGATATGTCAATGTTGTGTACCACATGGGAGGTGTGCTGACGCTTGTTGATGATACA 47.14 30 73 Obsolete Obsolete Obsolete Tc00.1047053508461.320::70::98.57143::7.8E-10::+
QTC00001_A_10 AGACTGTCAATGATGACCTCAGTGGGCGGGTATTACGCTTTTATGGTTACACAAAAGAACAAGTACCGGA 44.29 28 86 CL Brener Tc00.1047053510797.30 hypothetical protein, conserved Tc00.1047053506927.30::70::100.0::6.1E-11::+,Tc00.1047053510797.30::70::100.0::2.4E-10::+
QTC00001_A_11 TACGTTTCCGCTTCGGGTGAGGAGGAGCCACTGACGGATGCGATGCGGACAAAGATCGTTGTGCAGATCC 57.14 29 90 CL Brener Tc00.1047053508543.90 vacuolar-type Ca2+-ATPase, putative Tc00.1047053506401.170::70::100.0::2.7E-10::+,Tc00.1047053508543.90::70::100.0::2.7E-10::+
QTC00001_A_12 ATGTGATCAACATGGCTACATAGATGAGCTAGTGCGATATTTGATTGATACGGACAACGAGACGCTTATT 40.0 30 89 Obsolete Obsolete Obsolete Tc00.1047053481435.9::70::98.57143::5.2E-10::+,Tc00.1047053506167.50::70::98.57143::7.5E-10::+
QTC00001_A_13 TCAGGAAAAAAAGGAACTAAAAGAGTTTCTACATCGGCACAAACTGAGTCATTTGGAGGGATGTATCTCC 40.0 30 88 CL Brener Tc00.1047053506493.90 calpain cysteine peptidase, putative Tc00.1047053506493.90::70::100.0::2.9E-10::+,Tc00.1047053510121.170::70::97.14286::1.9E-9::+
QTC00001_A_14 ATGGACTCCATCGCTGCAAAAGAACGAAAAGAGTTGCTTTTTGAAGATATTTCTTGCAAACTACAAAAAG 35.71 30 94 CL Brener Tc00.1047053511317.30 regulator of nonsense transcripts 1, putative Tc00.1047053511317.30::70::100.0::2.5E-10::+
QTC00001_A_15 CCTTTTTGCGAAAAAGTTCCGCAAGCACGGCGTTCCATCTGTGAGCACCATCCTGACGAACTTCAAGGTC 51.43 30 94 CL Brener Tc00.1047053507251.20 ribosomal protein L21E (60S), putative Tc00.1047053507251.20::70::100.0::4.6E-11::+,Tc00.1047053506405.149::70::98.57143::1.2E-10::+
QTC00001_A_16 ATTGGACAGAATTTGTGCAGAAATGTCCCGTGCTGTTTTTTATACTTTTTCTTGTGGCACTAACCCGTCT 40.0 30 78 Obsolete Obsolete Obsolete
QTC00001_A_17 GATGTATTTGGCCCTAAGACGCATGCTTCGAGCCGGGGGACTGCGCATTGCCATTGCACCCATTTTTATC 52.86 29 69 CL Brener Tc00.1047053506227.240 hypothetical protein, conserved Tc00.1047053506227.240::70::100.0::2.8E-10::+
QTC00001_A_18 TGTTGACTTTGGATTTAAAGTTTGTTTCGTTAGATTCACCACTCAAGTCATTTATTACGAAGGAACTTAA 31.43 31 92 CL Brener Tc00.1047053506475.14 phosphatidylinositol 3-kinase, putative Tc00.1047053506475.14::70::100.0::3.0E-10::+
QTC00001_A_19 TGTCGGGTACGTTCTTGCCAAGATGGAGGATGAGGAAAAGCCGGCAAACATTCACGGCCACATCACGAGC 54.29 29 76 CL Brener Tc00.1047053506227.230 N-acetyltransferase complex ARD1 subunit, putative Tc00.1047053506227.230::70::100.0::7.3E-11::+
QTC00001_A_2 AAAAGAAGTGTGTGGTAGTGCTTGTTGTCGACATTGCGGACTTTCCTGGAACGATGGTTTATGACCTTCC 45.71 30 69 CL Brener Tc00.1047053509965.400 hypothetical protein, conserved Tc00.1047053509965.400::70::100.0::2.6E-10::+
QTC00001_A_20 GTGTGTGAAAAGGATGGTCTGTTTTCAGAGTCTATATCCTTCACGCCAAAGCACTTGCAACCTTTGGAAC 44.29 29 86 CL Brener Tc00.1047053503919.10 spliced leader RNA PSE-promoter transcription factor, putative Tc00.1047053503919.10::70::100.0::2.2E-10::+,Tc00.1047053508209.60::70::97.14286::1.5E-9::+
QTC00001_A_21 TGCAGTGTATCCGTTATGGAAGCTCGCAAATAGAAACGTTCTTGGCCGTCGTGCAGGGCGTGAGAAGCCA 52.86 30 64 CL Brener Tc00.1047053506227.220 hypothetical protein, conserved Tc00.1047053506227.220::70::100.0::1.9E-10::+
QTC00001_A_22 TTTAAGTGCACTTGCTGTAATTAATAGTTTGTTGGCATTTATCCGTGGATTTTCTTTTGCAATTGGAGGT 34.29 30 72 CL Brener Tc00.1047053506559.100 multidrug resistance-associated protein, putative Tc00.1047053506559.100::70::100.0::2.9E-10::+
QTC00001_A_23 GTTTTACATGCGGAAGGTAAAATTCACCCAAAAAACAATCAATGAGAAGCTCACACATGTTTTGTTGGAA 35.71 30 93 CL Brener Tc00.1047053510431.160 nucleolar GTP-binding protein 1, putative Tc00.1047053510431.160::70::100.0::2.3E-10::+
QTC00001_A_24 TTTATGCTGTCAAGAAGATTCTTACCAAGAAAGACCAATCGGAAAAAGTCCTGAGGGAGGTTCAGAGTTT 40.0 30 71 CL Brener Tc00.1047053508795.19 protein kinase, putative Tc00.1047053508795.19::70::100.0::1.6E-10::+
QTC00001_A_3 GACAATGAGATGGCCCGACAACAGCTTGAGGCCAGTTTATCCAGCTATCAAACACTTCTTGACAGCCTTT 47.14 30 82 CL Brener Tc00.1047053508179.30 hypothetical protein, conserved Tc00.1047053508179.30::70::100.0::2.7E-10::+,Tc00.1047053507103.29::70::97.14286::1.2E-9::+
QTC00001_A_4 ATTCTTCCCATCATGATTGATGAACGTGACGGTATGAAGCGGCGGTTAGATTTGTACAGGAGTTGGTGGA 45.71 30 78 CL Brener Tc00.1047053506203.30 helicase-like protein, putative Tc00.1047053506203.30::70::100.0::2.7E-10::+,Tc00.1047053508645.10::70::98.57143::6.9E-10::+
QTC00001_A_5 GAAGCTGAAGAAGAGTGACATACACGAGATTGTGCTGGTTGGCGGGTCGACACGCGTGCCAAAGGTGCAG 55.71 30 94 Obsolete Obsolete Obsolete Tc00.1047053506585.40::70::98.57143::5.9E-10::+

Total number of rows: 12788

Table truncated, full table size 3842 Kbytes.




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