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Platform GPL4429 Query DataSets for GPL4429
Status Public on Oct 23, 2006
Title sea urchin tiling array urchin5 (BC455)
Technology type in situ oligonucleotide
Distribution non-commercial
Organism Strongylocentrotus purpuratus
Manufacturer NASA Ames Research Center
Manufacture protocol Synthesized on glass-based slides using a maskless array synthesizer (Nimblegen technology).
Support glass
Coating unknown
 
Description 50-mer probes tiling the entire S. purpuratus genome
Control probes were placed on all arrays for monitoring hybridization quality and data normalization.
 
Web link http://www.systemix.org/sea-urchin
Contributor(s) Samanta MP, Tongprasit W, Istrail S, Cameron RA, Tu Q, Davidson EH, Stolc V
Submission date Oct 13, 2006
Last update date Oct 26, 2006
Contact name Manoj Samanta
E-mail(s) manoj.samanta@systemix.org
Phone 408-472-7927
Organization name Systemix Institute
Street address 2240 Homestead Court #309
City Los Altos
State/province CA
ZIP/Postal code 94024
Country USA
 
Samples (1) GSM140017
Series (1)
GSE6031 A high-resolution transcriptome map of the sea urchin embryo

Data table header descriptions
ID
X X coordinate of the array feature
Y Y coordinate of the array feature
SEQUENCE DNA sequence of oligonucleotide
PROBE_TYPE Type of probe (EXPERIMENT = probe from genome sequence, RAND = control probes for experiment, CONTROL = control probe for synthesis process and grid alignment)

Data table
ID X Y SEQUENCE PROBE_TYPE
377.273 377 273 GCTAGCATCACTGATTCCTATAAAAACAGCCCTGGGTGAATGCTTCCAGC RAND
277.243 277 243 CATTTAGCCATCTGTCGTTAGGAAGGGTCAGAGGTGGCTAGAGTTGAGAT RAND
197.105 197 105 GAGTATCAAACTGCTCTCTGAGATCTAGCGAATAAAACGTAGCTTTTCAC RAND
358.824 358 824 CTAACAACCATCATCATCGTCAAGGCGTCTGCTTATTCCGTCAATCTTAT RAND
607.695 607 695 AAATCTGTATCGCGTTTTCTGGGCACCGCATAGGGGGTCAAAGTGTTAAT RAND
89.191 89 191 GATCCCTGGATCGATGTTCCTAATTCGCCCCAATGTTGTGCAAGACGTCG RAND
430.130 430 130 AGACACTTAATTGGTTTAAGACAGAGTGGCGAGCTTTTTAGGTCATGACG RAND
215.303 215 303 GAACGTCTGAAAACATGCACTCAAAAACGCAAACTTGTTAACCAAGTTAA RAND
710.246 710 246 TGCTTACGTTGGTAAGACCAGAAATAATTGGGGGCAACAGGTGCATTGCT RAND
651.621 651 621 CAGAGGACTATGGAACTGGTGTGCCGGAGGGTAGGTTCTTGGGCAACGAT RAND
380.24 380 24 TTTCAGGGTCCCTCAATCACGAGTATTGTAAGCAAGGGATACTGTAATAA RAND
140.394 140 394 GGAACGACGTGAGATTGTAAGGGCAAAATGGGCATTGCGTGAGTGATGTT RAND
172.718 172 718 AACTACTTCTTATGCAGCAAGGTAAGGACCATTCGGTATACTGCGCAGTA RAND
626.276 626 276 TACGTTCGTCCTTGCAGACAAAATCAAGGACCACCTACAGGTGCAGAAAC RAND
233.351 233 351 CAAGCTTCAATCACATCGGCACGTTTCTTTACGTAGGGGAAGGGACCCTT RAND
595.713 595 713 GGGGTGATGCTTACTGTGCGTGTTTGGGATATCACTTTTTACCTTGTCGA RAND
103.397 103 397 AGCTGTATATGTGCCGTAGGTGCAGAACTTGGTAAACTCTAAGTATCGTA RAND
142.300 142 300 ATGTTATGTTACCCCCTTAAGCCCTCCCTTGGTGACACGAGTGCGTTTTA RAND
567.181 567 181 ACATGAGCAGGTCTATAGCAACTCTGCCTTTGCCTTATCACTTACGATAG RAND
475.655 475 655 GTACTTACAGAGACCCAGCCATCCATCTCTGATAACGGCTCTGACGATGT RAND

Total number of rows: 390407

Table truncated, full table size 29509 Kbytes.




Download family Format
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Supplementary data files not provided
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