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Platform GPL4519 Query DataSets for GPL4519
Status Public on Nov 03, 2006
Title [TB-All-Antisense] Affymetrix M. tuberculosis Antisense Array
Technology type in situ oligonucleotide
Distribution commercial
Organism Mycobacterium tuberculosis H37Rv
Manufacturer Affymetrix
Manufacture protocol The TB-All-Antisense GeneChip(R) array was manufactured by Affymetrix in 1998 for gene expression analysis of the M. tuberculosis H37Rv strain. This was a PM/MM design which covers all ORFs and intergenic regions described by GenBank as of Oct 1998. 3924 ORFs and 738 intergenic regions and their reverse complements are interrogated with 20 probe pairs each (25mers). There is a total of 118,180 probe pairs on the chip.

Note that this array is not the same as the M. tuberculosis array available through the Affymetrix NimbleExpress(TM) Made-To-Order program (array name: M_tubercul530104):

http://www.affymetrix.com/products/arrays/specific/nimble_prokaryotic.affx

The newer NimbleExpress array was designed using a more recent version of the M. tuberculosis genome, though most of the probe sets should detect largely the same set of expressed genes as the older TB-All-Antisense array.
 
Description Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html


Array name: TB-All-Antisense
Part Number: 510285
Organism: Mycobacterium tuberculosis strain H37Rv
Genome assembly: NC_000962.2
NetAffx version: Oct 2006
CSV version: 1.0

This annotation table was derived Affymetrix CSV file TB-All-Antisense_annot.csv [Version 1.0, 2006-10-31].
Appended README provides a guide to the contents of the CSV file containing annotations for the probe sets on the Affymetrix M. tuberculosis antisense array.
 
Web link http://www.affymetrix.com/support/technical
Submission date Nov 03, 2006
Last update date Oct 24, 2011
Organization Affymetrix, Inc.
E-mail(s) geo@ncbi.nlm.nih.gov, support@affymetrix.com
Phone 888-362-2447
URL http://www.affymetrix.com/index.affx
Street address
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (53) GSM183531, GSM183632, GSM183633, GSM183634, GSM1070311, GSM1070312 
Series (4)
GSE7588 Exploration of the Drug Action of Capreomycin on Mycobacterium tuberculosis
GSE43749 Global Gene expression data from Mycobacterium tuberculosis treated with new TB drug named Bedaquiline
GSE99710 Validation of RelMtb as a target for Mycobacterium tuberculosis persisters

Data table header descriptions
ID Affymetrix Probe Set
GeneChip Array The GeneChip probe array name.
Species Scientific Name The genus and species of the organism represented by the probe set.
Annotation Date The date that the annotations for this probe array were last updated. It will generally be earlier than the date when the annotations were posted on the Affymetrix web site.
Sequence Source The database from which the sequence used to design this probe set was taken.
ORF Locus_tag for Mycobacterium tuberculosis H37Rv
Target Description GenBank description associated with the representative public identifier. Blank for some probe sets.
Gene Title Title of Gene represented by the probe set.
Gene Symbol A gene symbol, when one is available (from UniGene).
Chromosomal Location Chromosomal location. We add the prefix "Chr:" to avoid problems with some spreadsheet applications interpreting some locations as Dates.
ENTREZ_GENE_ID Entrez Gene Database UID
RefSeq Protein ID ID of the protein sequence in the NCBI RefSeq database.
Annotation Description Annotation description
Annotation Note
SPOT_ID spot identifier

Data table
ID GeneChip Array Species Scientific Name Annotation Date Sequence Source ORF Target Description Gene Title Gene Symbol Chromosomal Location ENTREZ_GENE_ID RefSeq Protein ID Annotation Description Annotation Note SPOT_ID
dnaA-1-1524_at TB-All-Antisense Mycobacterium tuberculosis H37Rv 31-Oct-06 GenBank Rv0001 LOCUS_TAG=Rv0001 from gb:NC_000962.2 /GEN=dnaA /DB_XREF=GeneID:885041 /DB_XREF=PID:g15607143 /SEG=NC_000962.2:+1,1524 /LEN=1524 /DEF=chromosomal replication initiation protein /PROD=chromosomal replication initiation protein. PLAYS AN IMPORTANT ROLE IN THE INITIATION AND REGULATION OF CHROMOSOMAL REPLICATION. BINDS TO THE ORIGIN OF REPLICATION; IT BINDS SPECIFICALLY DOUBLE-STRANDED DNA AT A 9 BP CONSENSUS (DNAA BOX): 5'-TTATC(C/A)A(C/A)A-3'. DNAA BINDS TO ATP AND TO ACIDIC PHOSPHOLIPIDS. DNAA PROTEIN BINDS THE ORIGIN OF REPLICATION (oriC), ATP AND ADP, AND EXHIBITED WEAK ATPase ACTIVITY. chromosomal replication initiation protein dnaA NC_000962.2:1-1524(+) 885041 15607143 This probe set was annotated by examination of the probe set name. Annotations were extracted from the RefSeq genome entry NC_000962.2 using the gene or locus name embedded in the probe set name to look up the feature information in the RefSeq entry. ---
dnaN-2052-3260_at TB-All-Antisense Mycobacterium tuberculosis H37Rv 31-Oct-06 GenBank Rv0002 LOCUS_TAG=Rv0002 from gb:NC_000962.2 /GEN=dnaN /DB_XREF=GeneID:887092 /DB_XREF=PID:g15607144 /SEG=NC_000962.2:+2052,3260 /LEN=1209 /DEF=DNA polymerase III subunit beta /PROD=DNA polymerase III subunit beta. DNA POLYMERASE III IS A COMPLEX, MULTICHAIN ENZYME RESPONSIBLE FOR MOST OF THE REPLICATIVE SYNTHESIS IN BACTERIA. THIS DNA POLYMERASE ALSO EXHIBITS 3' TO 5' EXONUCLEASE ACTIVITY. THE BETA CHAIN IS REQUIRED FOR INITIATION OF REPLICATION ONCE IT IS CLAMPED ONTO DNA, IT SLIDES FREELY (BIDIRECTIONAL AND ATP-INDEPENDENT) ALONG DUPLEX DNA [CATALYTIC ACTIVITY: N deoxynucleoside triphosphate = N diphosphate + {DNA}N]. DNA polymerase III subunit beta dnaN NC_000962.2:2052-3260(+) 887092 15607144 This probe set was annotated by examination of the probe set name. Annotations were extracted from the RefSeq genome entry NC_000962.2 using the gene or locus name embedded in the probe set name to look up the feature information in the RefSeq entry. ---
recF-3280-4437_at TB-All-Antisense Mycobacterium tuberculosis H37Rv 31-Oct-06 GenBank Rv0003 LOCUS_TAG=Rv0003 from gb:NC_000962.2 /GEN=recF /DB_XREF=GeneID:887089 /DB_XREF=PID:g15607145 /SEG=NC_000962.2:+3280,4437 /LEN=1158 /DEF=recombination protein F /PROD=recombination protein F. THE RECF PROTEIN IS INVOLVED IN DNA METABOLISM AND RECOMBINATION; IT IS REQUIRED FOR DNA REPLICATION AND NORMAL SOS INDUCIBILITY. RECF BINDS PREFERENTIALLY TO SINGLE-STRANDED, LINEAR DNA. IT ALSO SEEMS TO BIND ATP. recombination protein F recF NC_000962.2:3280-4437(+) 887089 15607145 This probe set was annotated by examination of the probe set name. Annotations were extracted from the RefSeq genome entry NC_000962.2 using the gene or locus name embedded in the probe set name to look up the feature information in the RefSeq entry. ---
gyrB-5123-7267_at TB-All-Antisense Mycobacterium tuberculosis H37Rv 31-Oct-06 GenBank Rv0005 LOCUS_TAG=Rv0005 from gb:NC_000962.2 /GEN=gyrB /DB_XREF=GeneID:887081 /DB_XREF=PID:g15607147 /SEG=NC_000962.2:+5123,7267 /LEN=2145 /DEF=DNA topoisomerase IV subunit B /PROD=DNA topoisomerase IV subunit B. DNA GYRASE NEGATIVELY SUPERCOILS CLOSED CIRCULAR DOUBLE-STRANDED DNA IN AN ATP-DEPENDENT MANNER AND ALSO CATALYZES THE INTERCONVERSION OF OTHER TOPOLOGICAL ISOMERS OF DOUBLE-STRANDED DNA RINGS, INCLUDING CATENANES AND KNOTTED RINGS [CATALYTIC ACTIVITY: ATP-dependent breakage, passage and rejoining of double-stranded DNA]. DNA topoisomerase IV subunit B gyrB NC_000962.2:5123-7267(+) 887081 15607147 This probe set was annotated by examination of the probe set name. Annotations were extracted from the RefSeq genome entry NC_000962.2 using the gene or locus name embedded in the probe set name to look up the feature information in the RefSeq entry. ---
gyrA-7302-9818_1_at TB-All-Antisense Mycobacterium tuberculosis H37Rv 31-Oct-06 GenBank Rv0006 LOCUS_TAG=Rv0006 from gb:NC_000962.2 /GEN=gyrA /DB_XREF=GeneID:887105 /DB_XREF=PID:g15607148 /SEG=NC_000962.2:+7302,9818 /LEN=2517 /DEF=DNA gyrase subunit A /PROD=DNA gyrase subunit A. DNA GYRASE NEGATIVELY SUPERCOILS CLOSED CIRCULAR DOUBLE-STRANDED DNA IN AN ATP-DEPENDENT MANNER AND ALSO CATALYZES THE INTERCONVERSION OF OTHER TOPOLOGICAL ISOMERS OF DOUBLE-STRANDED DNA RINGS, INCLUDING CATENANES AND KNOTTED RINGS [CATALYTIC ACTIVITY: ATP-dependent breakage, passage and rejoining of double-stranded DNA]. DNA gyrase subunit A gyrA NC_000962.2:7302-9818(+) 887105 15607148 This probe set was annotated by examination of the probe set name. Annotations were extracted from the RefSeq genome entry NC_000962.2 using the gene or locus name embedded in the probe set name to look up the feature information in the RefSeq entry. ---
gyrA-7302-9818_2_at TB-All-Antisense Mycobacterium tuberculosis H37Rv 31-Oct-06 GenBank Rv0006 LOCUS_TAG=Rv0006 from gb:NC_000962.2 /GEN=gyrA /DB_XREF=GeneID:887105 /DB_XREF=PID:g15607148 /SEG=NC_000962.2:+7302,9818 /LEN=2517 /DEF=DNA gyrase subunit A /PROD=DNA gyrase subunit A. DNA GYRASE NEGATIVELY SUPERCOILS CLOSED CIRCULAR DOUBLE-STRANDED DNA IN AN ATP-DEPENDENT MANNER AND ALSO CATALYZES THE INTERCONVERSION OF OTHER TOPOLOGICAL ISOMERS OF DOUBLE-STRANDED DNA RINGS, INCLUDING CATENANES AND KNOTTED RINGS [CATALYTIC ACTIVITY: ATP-dependent breakage, passage and rejoining of double-stranded DNA]. DNA gyrase subunit A gyrA NC_000962.2:7302-9818(+) 887105 15607148 This probe set was annotated by examination of the probe set name. Annotations were extracted from the RefSeq genome entry NC_000962.2 using the gene or locus name embedded in the probe set name to look up the feature information in the RefSeq entry. ---
gyrA-7302-9818_at TB-All-Antisense Mycobacterium tuberculosis H37Rv 31-Oct-06 GenBank Rv0006 LOCUS_TAG=Rv0006 from gb:NC_000962.2 /GEN=gyrA /DB_XREF=GeneID:887105 /DB_XREF=PID:g15607148 /SEG=NC_000962.2:+7302,9818 /LEN=2517 /DEF=DNA gyrase subunit A /PROD=DNA gyrase subunit A. DNA GYRASE NEGATIVELY SUPERCOILS CLOSED CIRCULAR DOUBLE-STRANDED DNA IN AN ATP-DEPENDENT MANNER AND ALSO CATALYZES THE INTERCONVERSION OF OTHER TOPOLOGICAL ISOMERS OF DOUBLE-STRANDED DNA RINGS, INCLUDING CATENANES AND KNOTTED RINGS [CATALYTIC ACTIVITY: ATP-dependent breakage, passage and rejoining of double-stranded DNA]. DNA gyrase subunit A gyrA NC_000962.2:7302-9818(+) 887105 15607148 This probe set was annotated by examination of the probe set name. Annotations were extracted from the RefSeq genome entry NC_000962.2 using the gene or locus name embedded in the probe set name to look up the feature information in the RefSeq entry. ---
ppiA-12468-13016_at TB-All-Antisense Mycobacterium tuberculosis H37Rv 31-Oct-06 GenBank Rv0009 LOCUS_TAG=Rv0009 from gb:NC_000962.2 /GEN=ppiA /DB_XREF=GeneID:887087 /DB_XREF=PID:g15607151 /SEG=NC_000962.2:+12468,13016 /LEN=549 /DEF=PROBABLE IRON-REGULATED PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A PPIA (PPIase A) (ROTAMASE A) /PROD=PROBABLE IRON-REGULATED PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A PPIA (PPIase A) (ROTAMASE A). PPIASES ACCELERATE THE FOLDING OF PROTEINS [CATALYTIC ACTIVITY: CIS-TRANS ISOMERIZATION OF PROLINE IMIDIC PEPTIDE BONDS IN OLIGOPEPTIDES]. PROBABLE IRON-REGULATED PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A PPIA (PPIase A) (ROTAMASE A) ppiA NC_000962.2:12468-13016(+) 887087 15607151 This probe set was annotated by examination of the probe set name. Annotations were extracted from the RefSeq genome entry NC_000962.2 using the gene or locus name embedded in the probe set name to look up the feature information in the RefSeq entry. ---
pknB-15590-17470_at TB-All-Antisense Mycobacterium tuberculosis H37Rv 31-Oct-06 GenBank Rv0014c LOCUS_TAG=Rv0014c from gb:NC_000962.2 /GEN=pknB /DB_XREF=GeneID:887072 /DB_XREF=PID:g15607156 /SEG=NC_000962.2:-15590,17470 /LEN=1881 /DEF=TRANSMEMBRANE SERINE/THREONINE-PROTEIN KINASE B PKNB (PROTEIN KINASE B) (STPK B) /PROD=TRANSMEMBRANE SERINE/THREONINE-PROTEIN KINASE B PKNB (PROTEIN KINASE B) (STPK B). INVOLVED IN SIGNAL TRANSDUCTION (VIA PHOSPHORYLATION). THOUGHT TO REGULATE CELL DIVISION/DIFFERENTIATION. CAN PHOSPHORYLATE THE PEPTIDE SUBSTRATE MYELIN BASIC PROTEIN (MBP) [CATALYTIC ACTIVITY: ATP + A PROTEIN = ADP + A PHOSPHOPROTEIN]. TRANSMEMBRANE SERINE/THREONINE-PROTEIN KINASE B PKNB (PROTEIN KINASE B) (STPK B) pknB NC_000962.2:15590-17470(-) 887072 15607156 This probe set was annotated by examination of the probe set name. Annotations were extracted from the RefSeq genome entry NC_000962.2 using the gene or locus name embedded in the probe set name to look up the feature information in the RefSeq entry. ---
pknA-17467-18762_at TB-All-Antisense Mycobacterium tuberculosis H37Rv 31-Oct-06 GenBank Rv0015c LOCUS_TAG=Rv0015c from gb:NC_000962.2 /GEN=pknA /DB_XREF=GeneID:885953 /DB_XREF=PID:g15607157 /SEG=NC_000962.2:-17467,18762 /LEN=1296 /DEF=TRANSMEMBRANE SERINE/THREONINE-PROTEIN KINASE A PKNA (PROTEIN KINASE A) (STPK A) /PROD=TRANSMEMBRANE SERINE/THREONINE-PROTEIN KINASE A PKNA (PROTEIN KINASE A) (STPK A). INVOLVED IN SIGNAL TRANSDUCTION (VIA PHOSPHORYLATION). THOUGHT TO REGULATE MORPHOLOGICAL CHANGES ASSOCIATED WITH CELL DIVISION/DIFFERENTIATION PROCESS. PHOSPHORYLATES AT SERINE AND THREONINE RESIDUES [CATALYTIC ACTIVITY: ATP + A PROTEIN = ADP + A PHOSPHOPROTEIN]. TRANSMEMBRANE SERINE/THREONINE-PROTEIN KINASE A PKNA (PROTEIN KINASE A) (STPK A) pknA NC_000962.2:17467-18762(-) 885953 15607157 This probe set was annotated by examination of the probe set name. Annotations were extracted from the RefSeq genome entry NC_000962.2 using the gene or locus name embedded in the probe set name to look up the feature information in the RefSeq entry. ---
pbpA-18759-20234_at TB-All-Antisense Mycobacterium tuberculosis H37Rv 31-Oct-06 GenBank Rv0016c LOCUS_TAG=Rv0016c from gb:NC_000962.2 /GEN=pbpA /DB_XREF=GeneID:887078 /DB_XREF=PID:g15607158 /SEG=NC_000962.2:-18759,20234 /LEN=1476 /DEF=PROBABLE PENICILLIN-BINDING PROTEIN PBPA /PROD=PROBABLE PENICILLIN-BINDING PROTEIN PBPA. INVOLVED IN PEPTIDOGLYCAN SYNTHESIS (AT THE FINAL STAGES). CELL WALL FORMATION; PBPA IS SUPPOSED TO BE RESPONSIBLE FOR THE DETERMINATION OF THE ROD SHAPE OF THE CELL. ITS SYNTHESIZES CROSS-LINKED PEPTIDOGLYCAN FROM LIPID INTERMEDIATES. PROBABLE PENICILLIN-BINDING PROTEIN PBPA pbpA NC_000962.2:18759-20234(-) 887078 15607158 This probe set was annotated by examination of the probe set name. Annotations were extracted from the RefSeq genome entry NC_000962.2 using the gene or locus name embedded in the probe set name to look up the feature information in the RefSeq entry. ---
rodA-20231-21640_at TB-All-Antisense Mycobacterium tuberculosis H37Rv 31-Oct-06 GenBank Rv0017c LOCUS_TAG=Rv0017c from gb:NC_000962.2 /GEN=rodA /DB_XREF=GeneID:887075 /DB_XREF=PID:g15607159 /SEG=NC_000962.2:-20231,21640 /LEN=1410 /DEF=PROBABLE CELL DIVISION PROTEIN RODA /PROD=PROBABLE CELL DIVISION PROTEIN RODA. THIS IS A SEPTUM-PEPTIDOGLYCAN BIOSYNTHETIC PROTEIN, INVOLVED IN CELL WALL FORMATION. PLAYS A ROLE IN THE STABILIZATION OF THE FTSZ RING DURING CELL DIVISION. PROBABLE CELL DIVISION PROTEIN RODA rodA NC_000962.2:20231-21640(-) 887075 15607159 This probe set was annotated by examination of the probe set name. Annotations were extracted from the RefSeq genome entry NC_000962.2 using the gene or locus name embedded in the probe set name to look up the feature information in the RefSeq entry. ---
ppp-21637-23181_at TB-All-Antisense Mycobacterium tuberculosis H37Rv 31-Oct-06 GenBank Rv0018c LOCUS_TAG=Rv0018c from gb:NC_000962.2 /GEN=ppp /DB_XREF=GeneID:887070 /DB_XREF=PID:g15607160 /SEG=NC_000962.2:-21637,23181 /LEN=1545 /DEF=POSSIBLE SERINE/THREONINE PHOSPHATASE PPP /PROD=POSSIBLE SERINE/THREONINE PHOSPHATASE PPP. INVOLVED IN REGULATION (USING DEPHOSPHORYLATION OF A SPECIFIC PHOSPHORYLATED SUBSTRATE). POSSIBLE SERINE/THREONINE PHOSPHATASE PPP ppp NC_000962.2:21637-23181(-) 887070 15607160 This probe set was annotated by examination of the probe set name. Annotations were extracted from the RefSeq genome entry NC_000962.2 using the gene or locus name embedded in the probe set name to look up the feature information in the RefSeq entry. ---
bioF2-34295-36610_at TB-All-Antisense Mycobacterium tuberculosis H37Rv 31-Oct-06 GenBank Rv0032 LOCUS_TAG=Rv0032 from gb:NC_000962.2 /GEN=bioF2 /DB_XREF=GeneID:887050 /DB_XREF=PID:g15607174 /SEG=NC_000962.2:+34295,36610 /LEN=2316 /DEF=POSSIBLE 8-AMINO-7-OXONONANOATE SYNTHASE BIOF2 (AONS) (8-AMINO-7-KETOPELARGONATE SYNTHASE) (7-KETO-8-AMINO-PELARGONIC ACID SYNTHETASE) (7-KAP SYNTHETASE) (L-ALANINE--PIMELYL CoA LIGASE) /PROD=POSSIBLE 8-AMINO-7-OXONONANOATE SYNTHASE BIOF2 (AONS) (8-AMINO-7-KETOPELARGONATE SYNTHASE) (7-KETO-8-AMINO-PELARGONIC ACID SYNTHETASE) (7-KAP SYNTHETASE) (L-ALANINE--PIMELYL CoA LIGASE). COULD BE INVOLVED IN BIOTIN BIOSYNTHESIS (AT THE FIRST STEP) [CATALYTIC ACTIVITY: 6-CARBOXYHEXANOYL-COA + L-ALANINE = 8-AMINO-7-OXONONANOATE + CoA + CO2]. POSSIBLE 8-AMINO-7-OXONONANOATE SYNTHASE BIOF2 (AONS) (8-AMINO-7-KETOPELARGONATE SYNTHASE) (7-KETO-8-AMINO-PELARGONIC ACID SYNTHETASE) (7-KAP SYNTHETASE) (L-ALANINE--PIMELYL CoA LIGASE) bioF2 NC_000962.2:34295-36610(+) 887050 15607174 This probe set was annotated by examination of the probe set name. Annotations were extracted from the RefSeq genome entry NC_000962.2 using the gene or locus name embedded in the probe set name to look up the feature information in the RefSeq entry. ---
fadD34-37259-38947_at TB-All-Antisense Mycobacterium tuberculosis H37Rv 31-Oct-06 GenBank Rv0035 LOCUS_TAG=Rv0035 from gb:NC_000962.2 /GEN=fadD34 /DB_XREF=GeneID:887048 /DB_XREF=PID:g57116683 /SEG=NC_000962.2:+37259,38947 /LEN=1689 /DEF=PROBABLE FATTY-ACID-CoA LIGASE FADD34 (FATTY-ACID-CoA SYNTHETASE) (FATTY-ACID-CoA SYNTHASE) /PROD=PROBABLE FATTY-ACID-CoA LIGASE FADD34 (FATTY-ACID-CoA SYNTHETASE) (FATTY-ACID-CoA SYNTHASE). UNKNOWN, BUT INVOLVED IN LIPID DEGRADATION. PROBABLE FATTY-ACID-CoA LIGASE FADD34 (FATTY-ACID-CoA SYNTHETASE) (FATTY-ACID-CoA SYNTHASE) fadD34 NC_000962.2:37259-38947(+) 887048 57116683 This probe set was annotated by examination of the probe set name. Annotations were extracted from the RefSeq genome entry NC_000962.2 using the gene or locus name embedded in the probe set name to look up the feature information in the RefSeq entry. ---
leuS-43560-46469_1_at TB-All-Antisense Mycobacterium tuberculosis H37Rv 31-Oct-06 GenBank Rv0041 LOCUS_TAG=Rv0041 from gb:NC_000962.2 /GEN=leuS /DB_XREF=GeneID:887040 /DB_XREF=PID:g15607183 /SEG=NC_000962.2:+43562,46471 /LEN=2910 /DEF=leucyl-tRNA synthetase /PROD=leucyl-tRNA synthetase. INVOLVED IN TRANSLATION MECHANISM [CATALYTIC ACTIVITY: ATP + L-leucine + tRNA(Leu) = AMP + diphosphate + L-leucyl-tRNA(Leu)]. leucyl-tRNA synthetase leuS NC_000962.2:43562-46471(+) 887040 15607183 This probe set was annotated by examination of the probe set name. Annotations were extracted from the RefSeq genome entry NC_000962.2 using the gene or locus name embedded in the probe set name to look up the feature information in the RefSeq entry. ---
leuS-43560-46469_2_at TB-All-Antisense Mycobacterium tuberculosis H37Rv 31-Oct-06 GenBank Rv0041 LOCUS_TAG=Rv0041 from gb:NC_000962.2 /GEN=leuS /DB_XREF=GeneID:887040 /DB_XREF=PID:g15607183 /SEG=NC_000962.2:+43562,46471 /LEN=2910 /DEF=leucyl-tRNA synthetase /PROD=leucyl-tRNA synthetase. INVOLVED IN TRANSLATION MECHANISM [CATALYTIC ACTIVITY: ATP + L-leucine + tRNA(Leu) = AMP + diphosphate + L-leucyl-tRNA(Leu)]. leucyl-tRNA synthetase leuS NC_000962.2:43562-46471(+) 887040 15607183 This probe set was annotated by examination of the probe set name. Annotations were extracted from the RefSeq genome entry NC_000962.2 using the gene or locus name embedded in the probe set name to look up the feature information in the RefSeq entry. ---
leuS-43560-46469_at TB-All-Antisense Mycobacterium tuberculosis H37Rv 31-Oct-06 GenBank Rv0041 LOCUS_TAG=Rv0041 from gb:NC_000962.2 /GEN=leuS /DB_XREF=GeneID:887040 /DB_XREF=PID:g15607183 /SEG=NC_000962.2:+43562,46471 /LEN=2910 /DEF=leucyl-tRNA synthetase /PROD=leucyl-tRNA synthetase. INVOLVED IN TRANSLATION MECHANISM [CATALYTIC ACTIVITY: ATP + L-leucine + tRNA(Leu) = AMP + diphosphate + L-leucyl-tRNA(Leu)]. leucyl-tRNA synthetase leuS NC_000962.2:43562-46471(+) 887040 15607183 This probe set was annotated by examination of the probe set name. Annotations were extracted from the RefSeq genome entry NC_000962.2 using the gene or locus name embedded in the probe set name to look up the feature information in the RefSeq entry. ---
rpsF-58190-58480_at TB-All-Antisense Mycobacterium tuberculosis H37Rv 31-Oct-06 GenBank Rv0053 LOCUS_TAG=Rv0053 from gb:NC_000962.2 /GEN=rpsF /DB_XREF=GeneID:887020 /DB_XREF=PID:g15607195 /SEG=NC_000962.2:+58192,58482 /LEN=291 /DEF=30S ribosomal protein S6 /PROD=30S ribosomal protein S6. BINDS TOGETHER WITH S18 TO 16S RIBOSOMAL RNA. 30S ribosomal protein S6 rpsF NC_000962.2:58192-58482(+) 887020 15607195 This probe set was annotated by examination of the probe set name. Annotations were extracted from the RefSeq genome entry NC_000962.2 using the gene or locus name embedded in the probe set name to look up the feature information in the RefSeq entry. ---
ssb-58584-59078_at TB-All-Antisense Mycobacterium tuberculosis H37Rv 31-Oct-06 GenBank Rv0054 LOCUS_TAG=Rv0054 from gb:NC_000962.2 /GEN=ssb /DB_XREF=GeneID:887013 /DB_XREF=PID:g15607196 /SEG=NC_000962.2:+58586,59080 /LEN=495 /DEF=single-strand DNA-binding protein /PROD=single-strand DNA-binding protein. THIS PROTEIN IS ESSENTIAL FOR REPLICATION OF THE CHROMOSOME. IT IS ALSO INVOLVED IN DNA RECOMBINATION AND REPAIR. single-strand DNA-binding protein ssb NC_000962.2:58586-59080(+) 887013 15607196 This probe set was annotated by examination of the probe set name. Annotations were extracted from the RefSeq genome entry NC_000962.2 using the gene or locus name embedded in the probe set name to look up the feature information in the RefSeq entry. ---

Total number of rows: 6022

Table truncated, full table size 5007 Kbytes.






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Supplementary file Size Download File type/resource
GPL4519_TB-All-Antisense-AFFX_README.NetAffx-CSV-Files.txt.gz 3.3 Kb (ftp)(http) TXT
GPL4519_TB-All-Antisense_probe_fasta.txt.gz 3.5 Mb (ftp)(http) TXT
GPL4519_TB-All-Antisense_target.txt.gz 1.1 Mb (ftp)(http) TXT

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