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Status
Public on Nov 09, 2006
Title
Zebra finch brain cDNA microarray (v1)
Technology type
spotted DNA/cDNA
Distribution
non-commercial
Organism
Taeniopygia guttata Manufacturer
Rockefeller University
Manufacture protocol
Based on the redundancy analysis, highly redundant clones were removed, and in the re-assembled printing set, each gene transcript was represented one or two times. The cDNA inserts were PCR amplified. The PCR products were purified, checked by gel electrophoresis and quantified by UV absorption. The DNA samples were dissolved in 35% DMSO and printed in duplicate onto glass slides (UltraGAPS, Corning) using the MicroGrid (BioRobotics). Slides were then cross-linked by UV radiation at 360J.
Support
glass
Coating
aminosilane
Contributor(s)
Li X Submission date
Nov 07, 2006
Last update date
Nov 09, 2006
Contact name
XiaoChing Li
E-mail(s)
lixc@rockefeller.edu Phone
(212) 327-8381
Organization name
Rockefeller University
Street address
1230 York Avenue
City
New York
State/province
NY
ZIP/Postal code
10021
Country
USA
Samples (24)
GSM147350 , GSM147523 , GSM147534 , GSM147536 , GSM147538 , GSM147539
GSM147540 ,
GSM147542 ,
GSM147544 ,
GSM147546 ,
GSM147547 ,
GSM147549 ,
GSM147766 ,
GSM147768 ,
GSM147769 ,
GSM147770 ,
GSM147771 ,
GSM147772 ,
GSM147773 ,
GSM147775 ,
GSM147776 ,
GSM147777 ,
GSM147778 ,
GSM147779 Series (1)
GSE6412 Genomic Resources for Birdsong Research
Data table header descriptions ID GB_ACC GenBank Accession number
CLONE ID MAGPIE (v1) clone IDs from 96-well plates
384_PRINTING_ID printing clone IDs from 384-well plates
GENE_DESCRIPTION annotations based on blast results from NCBI protein and nt databases
Data table ID GB_ACC CLONE ID 384_PRINTING_ID GENE_DESCRIPTION EE059108
EE059108.1 zf_eli1_D02
1E1
collagen alpha-2 [Gallus gallus]
EE059263
EE059263.1 zf_eli10_B12
2E1
Homo sapiens alpha thalassemia/mental retardation syndrome X-linked
EE060520
EE060520.1 zf_eli3_A02
3E1
"Gallus gallus histone deacetylase 2 (HDAC2), mRNA"
EE059455
EE059455.1 zf_eli13_B03
4E1
RINT-1 protein [Homo sapiens]
EE060328
EE060328.1 zf_eli23_B11
5E1
homologue to UP|CIRP_HUMAN (Q14011) Cold-inducible
EE060875
EE060875.1 zf_eli34_D05
6E1
similar to epsilon1-COP [Gallus gallus]
EE061206
EE061206.1 zf_eli38_H03
7E1
0
EE050596
EE050596.1 zf_yg3k_1_C2
8E1
Taeniopygia guttata clone 0058P0019B08 tubulin alpha-2 chain variant
EE052713
EE052713.1 zf_yg3k_4_F01
9E1
similar to UP|DBP1_HUMAN (Q96EV8) Dystrobrevin binding
EE049767
EE049767.1 zf_000_C11
10E1
similar to calcium binding protein P22; calcineurin homologous
EE061672
EE061672.1 zf_eli6_A01
1E2
0
EE050280
EE050280.1 zf_007_A6
11E1
PREDICTED: similar to KIAA0960 protein [Gallus gallus]
EE053654
EE053654.1 ZF30D-3_C1
12E1
PREDICTED: similar to NPD014 protein isoform 2 [Gallus gallus]
EE053288
EE053288.1 ZF30D-1_C1
13E1
"PREDICTED: similar to Aldehyde dehydrogenase, mitochondrial"
EE055205
EE055205.1 zf_60d3k1_C10
14E1
0
EE058143
EE058143.1 zf_60d3k6_B12
15E1
"similar to UP|Q7S1Q7 (Q7S1Q7) Predicted protein, partial"
EE050778
EE050778.1 zf_yg3k_11_A4
16E1
"PREDICTED: Gallus gallus LOC417524 (LOC417524), mRNA"
EE051348
EE051348.1 zf_yg3k_17_D12
17E1
PREDICTED: similar to DnaJ homolog subfamily B member 11 precursor
EE052017
EE052017.1 zf_yg3k_24_B7
18E1
0
EE054906
EE054906.1 zf_30d3k_7_A4
19E1
0
7521 576 Kbytes .Supplementary data files not provided
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