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Platform GPL4534 Query DataSets for GPL4534
Status Public on Nov 08, 2006
Title Agilent-013842 Drosophila ChIP-on-Chip Set 44K, Array 6 (G4475A)
Technology type in situ oligonucleotide
Distribution commercial
Organism Drosophila melanogaster
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
Catalog number G4475A
 
Description
ChIP array

Arrays of this design have barcodes that begin with 16013842 or 2513842.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Nov 08, 2006
Last update date Nov 09, 2006
Organization Agilent Technologies
E-mail(s) cag_sales-na@agilent.com
Phone 877-424-4536
URL http://www.agilent.com
Department
Street address
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GB_ACC GenBankAccession
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location based on the April 2004 build (dm2 on UCSC)
CYTOBAND Cytoband
DESCRIPTION Description

Data table
ID COL ROW SPOT_ID CONTROL_TYPE GB_ACC GENE_SYMBOL GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION
1 103 430 BrightCorner pos
2 103 428 NegativeControl neg
3 103 426 A_82_P0237438 FALSE chr3L:19523259-19523200 Genomic probe on ( - ) strand
4 103 424 A_82_P0235465 FALSE chr3L:19010479-19010538 Genomic probe on (+) strand
5 103 422 NA ignore
6 103 420 A_82_P0210245 FALSE chr3L:12494800-12494859 Genomic probe on (+) strand
7 103 418 A_82_P0232747 FALSE chr3L:18294006-18294065 Genomic probe on (+) strand
8 103 416 A_82_P0221734 FALSE chr3L:15462797-15462738 Genomic probe on ( - ) strand
9 103 414 A_82_P0229343 FALSE chr3L:17400798-17400857 Genomic probe on (+) strand
10 103 412 A_82_P0221871 FALSE chr3L:15494245-15494304 Genomic probe on (+) strand
11 103 410 A_82_P0239975 FALSE chr3L:20206167-20206226 Genomic probe on (+) strand
12 103 408 A_82_P0210680 FALSE chr3L:12606020-12605961 Genomic probe on ( - ) strand
13 103 406 A_82_P0211442 FALSE chr3L:12800046-12799987 Genomic probe on ( - ) strand
14 103 404 A_82_P0243549 FALSE chr3L:21147018-21147077 Genomic probe on (+) strand
15 103 402 A_82_P0204063 FALSE chr3L:10913852-10913911 Genomic probe on (+) strand
16 103 400 A_82_P0204006 FALSE chr3L:10899661-10899602 Genomic probe on ( - ) strand
17 103 398 A_82_P0238859 FALSE chr3L:19908645-19908704 Genomic probe on (+) strand
18 103 396 A_82_P0230521 FALSE chr3L:17711147-17711206 Genomic probe on (+) strand
19 103 394 A_82_P0218016 FALSE chr3L:14512709-14512650 Genomic probe on ( - ) strand
20 103 392 A_82_P0243468 FALSE chr3L:21128411-21128352 Genomic probe on ( - ) strand

Total number of rows: 44290

Table truncated, full table size 3717 Kbytes.




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