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Status
Public on Apr 02, 2007
Title
HortResearch_Arabidopsis_27K_Operon long oligo set_V1.0
Technology type
spotted oligonucleotide
Distribution
non-commercial
Organism
Arabidopsis thaliana
Manufacturer
HortResearch
Manufacture protocol
Robot spotted, 32 pin grids each 29x29 elements. Total of 26912 elements based on Operon Arabidopsis V1.0 long oligo set plus additional controls.
Support
glass
Coating
unknown
Contributor(s)
Day RC , Jansen B
Submission date
Jan 03, 2007
Last update date
Apr 02, 2007
Contact name
Robert Day
E-mail(s)
dayro345@student.otago.ac.nz
Phone
4797872
Organization name
University of Otago
Department
Biochemistry
Lab
Macknight
Street address
Cumberland Street
City
Dunedin
State/province
Otago
ZIP/Postal code
NA
Country
New Zealand
Samples (12)
GSM154163 , GSM154164 , GSM154165 , GSM154166 , GSM154185 , GSM154186
Series (3)
GSE6663
Expression analysis of proliferative phase Arabidopsis thaliana endosperm
GSE6671
Comparison of conventional target labelling to PCR and IVT amplified target populations
GSE6703
Expression analysis of two-round IVT-amplified LCM samples: Arabidopsis endosperm
Data table header descriptions
ID
Block
Pingrid
Column
Horizontal position in pingrid
Row
Vertical posistion in pingrid
oligo_id
Operon assigned ID
locus
AGI locus targeted by oligo
ORF
locus tag
description
Annotation of target sequences
SPOT_ID
spot identifier
Data table
ID
Block
Column
Row
oligo_id
locus
ORF
description
SPOT_ID
1
1
1
1
A025518_01
Genomic sequence for Arabidopsis thaliana BAC F14D16 from chromosome I
OperonID_A025518_01
2
1
2
1
A025542_01
At1g29310
At1g29310
flower pigmentation protein ATAN11
3
1
3
1
A025566_01
At1g13460
At1g13460
serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putative similar to SWISS-PROT:Q28653 serine/threonine protein phosphatase 2A, 56 kDa regulatory subunit, delta isoform (PP2A, B subunit, B' delta isoform, PP2A, B subunit, B56 delta isoform, PP2A, B subunit, PR61 delta isoform, PP2A, B subunit, R5 delta isoform, PP2A, B subunit, B'-gamma) [Oryctolagus cuniculus]; contains Pfam domain, PF01603: Protein phosphatase 2A regulatory B subunit (B56 family)
4
1
4
1
A025590_01
Genomic sequence for Arabidopsis thaliana BAC F7F22 from chromosome I
OperonID_A025590_01
5
1
5
1
A025890_01
At1g64190
At1g64190
6-phosphogluconate dehydrogenase -related
6
1
6
1
A025914_01
At5g12250
At5g12250
tubulin beta-6 chain (TUB6) nearly identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis thaliana}
7
1
7
1
A025938_01
At2g15390
At2g15390
xyloglucan fucosyltransferase, putative
8
1
8
1
A025962_01
Sequence of BAC F14O10 from Arabidopsis thaliana chromosome 1
OperonID_A025962_01
9
1
9
1
A025894_01
At3g29360
At3g29360
UDP-glucose dehydrogenase -related
10
1
10
1
A025918_01
At1g25141
At1g25141
F-box protein-related
11
1
11
1
A025942_01
At3g52180
At3g52180
protein tyrosine phosphatase/kinase interaction sequence protein (PTPKIS1) identical to PTPKIS1 protein [Arabidopsis thaliana] GI:11595504; contains Pfam profile PF00782: Dual specificity phosphatase, catalytic domain
12
1
12
1
A025966_01
At2g44450
At2g44450
glycosyl hydrolase family 1 protein contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; similar to amygdalin hydrolase isoform AH I precursor (GI:16757966) [Prunus serotina]
13
1
13
1
A025898_01
At1g78830
At1g78830
curculin-like (mannose-binding) lectin family
14
1
14
1
A025922_01
At4g27830
At4g27830
glycosyl hydrolase family 1
15
1
15
1
A025946_01
At1g35670
At1g35670
calcium-dependent protein kinase (CDPK)
16
1
16
1
A025970_01
At5g08670
At5g08670
H+transporting ATP synthase beta chain (mitochondrial) -related
17
1
17
1
A020780_01
At2g17190
At2g17190
ubiquitin family protein contains INTERPRO:IPR000626 ubiquitin domain
18
1
18
1
A020780_01
At2g17190
At2g17190
ubiquitin family protein contains INTERPRO:IPR000626 ubiquitin domain
19
1
19
1
A020780_01
At2g17190
At2g17190
ubiquitin family protein contains INTERPRO:IPR000626 ubiquitin domain
20
1
20
1
A020780_01
At2g17190
At2g17190
ubiquitin family protein contains INTERPRO:IPR000626 ubiquitin domain
Total number of rows: 26912 Table truncated, full table size 3806 Kbytes .
Supplementary data files not provided