NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL4720 Query DataSets for GPL4720
Status Public on Apr 02, 2007
Title HortResearch_Arabidopsis_27K_Operon long oligo set_V1.0
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Arabidopsis thaliana
Manufacturer HortResearch
Manufacture protocol Robot spotted, 32 pin grids each 29x29 elements. Total of 26912 elements based on Operon Arabidopsis V1.0 long oligo set plus additional controls.
Support glass
Coating unknown
 
 
Contributor(s) Day RC, Jansen B
Submission date Jan 03, 2007
Last update date Apr 02, 2007
Contact name Robert Day
E-mail(s) dayro345@student.otago.ac.nz
Phone 4797872
Organization name University of Otago
Department Biochemistry
Lab Macknight
Street address Cumberland Street
City Dunedin
State/province Otago
ZIP/Postal code NA
Country New Zealand
 
Samples (12) GSM154163, GSM154164, GSM154165, GSM154166, GSM154185, GSM154186 
Series (3)
GSE6663 Expression analysis of proliferative phase Arabidopsis thaliana endosperm
GSE6671 Comparison of conventional target labelling to PCR and IVT amplified target populations
GSE6703 Expression analysis of two-round IVT-amplified LCM samples: Arabidopsis endosperm

Data table header descriptions
ID
Block Pingrid
Column Horizontal position in pingrid
Row Vertical posistion in pingrid
oligo_id Operon assigned ID
locus AGI locus targeted by oligo
ORF locus tag
description Annotation of target sequences
SPOT_ID spot identifier

Data table
ID Block Column Row oligo_id locus ORF description SPOT_ID
1 1 1 1 A025518_01 Genomic sequence for Arabidopsis thaliana BAC F14D16 from chromosome I OperonID_A025518_01
2 1 2 1 A025542_01 At1g29310 At1g29310 flower pigmentation protein ATAN11
3 1 3 1 A025566_01 At1g13460 At1g13460 serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putative similar to SWISS-PROT:Q28653 serine/threonine protein phosphatase 2A, 56 kDa regulatory subunit, delta isoform (PP2A, B subunit, B' delta isoform, PP2A, B subunit, B56 delta isoform, PP2A, B subunit, PR61 delta isoform, PP2A, B subunit, R5 delta isoform, PP2A, B subunit, B'-gamma) [Oryctolagus cuniculus]; contains Pfam domain, PF01603: Protein phosphatase 2A regulatory B subunit (B56 family)
4 1 4 1 A025590_01 Genomic sequence for Arabidopsis thaliana BAC F7F22 from chromosome I OperonID_A025590_01
5 1 5 1 A025890_01 At1g64190 At1g64190 6-phosphogluconate dehydrogenase -related
6 1 6 1 A025914_01 At5g12250 At5g12250 tubulin beta-6 chain (TUB6) nearly identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis thaliana}
7 1 7 1 A025938_01 At2g15390 At2g15390 xyloglucan fucosyltransferase, putative
8 1 8 1 A025962_01 Sequence of BAC F14O10 from Arabidopsis thaliana chromosome 1 OperonID_A025962_01
9 1 9 1 A025894_01 At3g29360 At3g29360 UDP-glucose dehydrogenase -related
10 1 10 1 A025918_01 At1g25141 At1g25141 F-box protein-related
11 1 11 1 A025942_01 At3g52180 At3g52180 protein tyrosine phosphatase/kinase interaction sequence protein (PTPKIS1) identical to PTPKIS1 protein [Arabidopsis thaliana] GI:11595504; contains Pfam profile PF00782: Dual specificity phosphatase, catalytic domain
12 1 12 1 A025966_01 At2g44450 At2g44450 glycosyl hydrolase family 1 protein contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; similar to amygdalin hydrolase isoform AH I precursor (GI:16757966) [Prunus serotina]
13 1 13 1 A025898_01 At1g78830 At1g78830 curculin-like (mannose-binding) lectin family
14 1 14 1 A025922_01 At4g27830 At4g27830 glycosyl hydrolase family 1
15 1 15 1 A025946_01 At1g35670 At1g35670 calcium-dependent protein kinase (CDPK)
16 1 16 1 A025970_01 At5g08670 At5g08670 H+transporting ATP synthase beta chain (mitochondrial) -related
17 1 17 1 A020780_01 At2g17190 At2g17190 ubiquitin family protein contains INTERPRO:IPR000626 ubiquitin domain
18 1 18 1 A020780_01 At2g17190 At2g17190 ubiquitin family protein contains INTERPRO:IPR000626 ubiquitin domain
19 1 19 1 A020780_01 At2g17190 At2g17190 ubiquitin family protein contains INTERPRO:IPR000626 ubiquitin domain
20 1 20 1 A020780_01 At2g17190 At2g17190 ubiquitin family protein contains INTERPRO:IPR000626 ubiquitin domain

Total number of rows: 26912

Table truncated, full table size 3806 Kbytes.






Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap