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| Status |
Public on Feb 01, 2007 |
| Title |
FHCRC Human Prostate PEDB cDNA Array v10 |
| Technology type |
spotted DNA/cDNA |
| Distribution |
non-commercial |
| Organism |
Homo sapiens |
| Manufacturer |
FHCRC Array Facility |
| Manufacture protocol |
DNA spotted onto polylysine-coated glass microscope slides
|
| Support |
glass |
| Coating |
polysine |
| |
|
| Description |
FHCRC Human Prostate PEDB cDNA Array v10
|
| |
|
| Web link |
http://www.pedb.org
|
| Contributor(s) |
Nelson PS, Coleman I, Dumpit R, Abbott DE |
| Submission date |
Jan 19, 2007 |
| Last update date |
Jan 17, 2013 |
| Contact name |
Denise Mauldin |
| E-mail(s) |
dmauldin@fhcrc.org
|
| Phone |
2066673480
|
| Fax |
2066672917
|
| URL |
http://www.pedb.org
|
| Organization name |
Fred Hutchinson Cancer Research Center
|
| Department |
Human Biology
|
| Lab |
Peter Nelson
|
| Street address |
1100 Fairview Ave N D4-100
|
| City |
Seattle |
| State/province |
WA |
| ZIP/Postal code |
98109 |
| Country |
USA |
| |
|
| Samples (53)
|
GSM159999, GSM160000, GSM160001, GSM160002, GSM251831, GSM251832
GSM251833, GSM251834, GSM251835, GSM251836, GSM251837, GSM251838, GSM251839, GSM251840, GSM251841, GSM251842, GSM251844, GSM251845, GSM251846, GSM251847, GSM251848, GSM251849, GSM251850, GSM251851, GSM251852, GSM251853, GSM251854, GSM251855, GSM251857, GSM251858, GSM251859, GSM251860, GSM251861, GSM251862, GSM251864, GSM251865, GSM251866, GSM251867, GSM251868, GSM251869, GSM251870, GSM251871, GSM251872, GSM251873, GSM252340, GSM252341, GSM252342, GSM252343, GSM252344, GSM252345, GSM252346, GSM252347, GSM252348
|
| Series (3) |
| GSE6936 |
Comparison of Normal Prostate Fibroblasts Overexpressing Cyclin D1 and Carcinoma Associated Fibroblasts |
| GSE9972 |
Prostate Cancer Gene Expression Changes after Treatment with Neoadjuvant Dutasteride |
| GSE9983 |
Prostate Cancer Gene Expression Changes with Neoadjuvant Hormone Therapy |
|
| Data table header descriptions |
| ID |
|
| MetaCol |
Column referring to overall organization |
| MetaRow |
Row referring to overall organization |
| Column |
Column within metastructure |
| Row |
Row within metastructure |
| Biosequence Type |
type of clone |
| Strand Type |
strandedness |
| GB_ACC |
Accession number |
| SPOT_ID |
problem sequence identification |
| UNIGENE |
Unigene Cluster from Unigene 192 |
| Reporter Usage |
Reporter role [control or experimental] |
| Control Type |
Type of Control |
| PEDB Spot ID |
Spot ID, one per gene on array |
| Designation |
Reporter type |
| Related Gene Symbol |
Hugo/Gene Symbol |
| Description |
Gene description |
| GENE |
Entrez GENE ID |
| Chromosome |
Chromosome Location |
| Clone Plate ID |
Clone location on Print Plate |
| Data table |
| ID |
MetaCol |
MetaRow |
Column |
Row |
Biosequence Type |
Strand Type |
GB_ACC |
SPOT_ID |
UNIGENE |
Reporter Usage |
Control Type |
PEDB Spot ID |
Designation |
Related Gene Symbol |
Description |
GENE |
Chromosome |
Clone Plate ID |
| 237241 |
1 |
1 |
1 |
1 |
cdna clone |
double |
BC005306 |
- |
546239 |
Experimental |
|
P:1 |
Gene |
AZGP1 |
Alpha-2-glycoprotein 1 zinc |
563 |
7q22.1 |
01_A01 |
| 237263 |
1 |
1 |
2 |
1 |
cdna clone |
double |
CN387513 |
- |
520640 |
Experimental |
|
P:305 |
Gene |
ACTB |
Actin beta |
60 |
7p15-p12 |
01_G09 |
| 237285 |
1 |
1 |
3 |
1 |
cdna clone |
double |
NM_001759 |
- |
376071 |
Experimental |
|
P:681 |
Gene |
CCND2 |
Cyclin D2 |
894 |
12p13 |
05_G05 |
| 237307 |
1 |
1 |
4 |
1 |
cdna clone |
double |
BC043190 |
- |
569686 |
Experimental |
|
P:1057 |
Gene |
- |
MRNA cDNA DKFZp566M0947 (from clone DKFZp566M0947) |
- |
- |
09_G01 |
| 237329 |
1 |
1 |
5 |
1 |
cdna clone |
double |
BQ652686 |
- |
481860 |
Experimental |
|
P:1361 |
Gene |
TARS |
Threonyl-tRNA synthetase |
6897 |
5p13.2 |
13_E09 |
| 237351 |
1 |
1 |
6 |
1 |
cdna clone |
double |
BC013301 |
- |
460978 |
Experimental |
|
P:1737 |
Gene |
APPBP1 |
Amyloid beta precursor protein binding protein 1 |
8883 |
16q22 |
17_E05 |
| 237373 |
1 |
1 |
7 |
1 |
cdna clone |
double |
|
Failed Sequencing |
- |
Experimental |
|
P:2113 |
Gene |
- |
Failed Sequencing |
- |
- |
21_E01 |
| 237395 |
1 |
1 |
8 |
1 |
cdna clone |
double |
CR626838 |
- |
377992 |
Experimental |
|
P:2417 |
Gene |
RABGGTA |
Rab geranylgeranyltransferase alpha subunit |
5875 |
14q11.2 |
25_C09 |
| 237417 |
1 |
1 |
9 |
1 |
cdna clone |
double |
BC068486 |
- |
503222 |
Experimental |
|
P:2793 |
Gene |
RAB6A |
RAB6A member RAS oncogene family |
5870 |
11q13.3 |
29_C05 |
| 237439 |
1 |
1 |
10 |
1 |
cdna clone |
double |
CR619880 |
- |
189772 |
Experimental |
|
P:3169 |
Gene |
CCT2 |
Chaperonin containing TCP1 subunit 2 (beta) |
10576 |
12q15 |
33_C01 |
| 237461 |
1 |
1 |
11 |
1 |
cdna clone |
double |
BC007409 |
- |
512661 |
Experimental |
|
P:3473 |
Gene |
KIAA1160 |
KIAA1160 protein |
57461 |
3q21.3 |
37_A09 |
| 237483 |
1 |
1 |
12 |
1 |
cdna clone |
double |
AJ420421 |
- |
213470 |
Experimental |
|
P:3849 |
Gene |
PSMB7 |
Proteasome (prosome macropain) subunit beta type 7 |
5695 |
9q34.11-q34.12 |
41_A05 |
| 237505 |
1 |
1 |
13 |
1 |
cdna clone |
double |
CD675389 |
- |
517293 |
Experimental |
|
P:4225 |
Gene |
F11R |
F11 receptor |
50848 |
1q21.2-q21.3 |
45_A01 |
| 237527 |
1 |
1 |
14 |
1 |
cdna clone |
double |
NM_006911 |
- |
368996 |
Experimental |
|
P:4529 |
Gene |
RLN1 |
Relaxin 1 |
6013 |
9p24.1 |
45_G09 |
| 237549 |
1 |
1 |
15 |
1 |
cdna clone |
double |
NM_015414 |
- |
408018 |
Experimental |
|
P:4905 |
Gene |
RPL36 |
Ribosomal protein L36 |
25873 |
19p13.3 |
49_G05 |
| 237571 |
1 |
1 |
16 |
1 |
cdna clone |
double |
BG028620 |
- |
445403 |
Experimental |
|
P:5281 |
Gene |
IARS |
Isoleucine-tRNA synthetase |
3376 |
9q21 |
53_G01 |
| 237593 |
1 |
1 |
17 |
1 |
cdna clone |
double |
AI557503 |
- |
503721 |
Experimental |
|
P:5585 |
Gene |
DYNC2H1 |
mitochondria: Dynein cytoplasmic 2 heavy chain 1 |
79659 |
11q21-q22.1 |
57_E09 |
| 237615 |
1 |
1 |
18 |
1 |
cdna clone |
double |
AC084756 |
- |
- |
Experimental |
|
P:5961 |
Gene |
- |
Homo sapiens chromosome 15 clone RP11-120K9 map 15q21.2 complete sequence |
- |
- |
61_E05 |
| 237637 |
1 |
1 |
19 |
1 |
cdna clone |
double |
|
Failed Sequencing |
- |
Experimental |
|
P:6241 |
Gene |
- |
Failed Sequencing |
- |
- |
65_E01 |
| 237659 |
1 |
1 |
20 |
1 |
cdna clone |
double |
|
Failed Sequencing |
- |
Experimental |
|
P:6562 |
Gene |
- |
Failed Sequencing |
- |
- |
69_C09 |
Total number of rows: 15488
Table truncated, full table size 2084 Kbytes.
| Supplementary data files not provided |
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