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Status
Public on Feb 02, 2007
Title
Medicago truncatula 16K Genome Oligo Set
Technology type
spotted oligonucleotide
Distribution
non-commercial
Organism
Medicago truncatula Manufacturer
The Medicago Genome Oligo Set Version 1.0 (Qiagen Operon, Alameda, CA)
Manufacture protocol
The oligos were spotted in 3x SSC onto Superamine (Telechem) glass slides by the Galbraith lab at the University of Arizona (Tucson, AZ). A single array element was printed per oligo. After printing, slides were baked at 80°C for 1 hour and stored at RT.
Description
The Medicago Genome Oligo Set Version 1.0 (Qiagen Operon, Alameda, CA) includes 70-mer oligonucleotides representing 16,086 M. truncatula tentative consensus sequences (TCs) from The Institute of Genome Research (TIGR) Gene Index Database (www.tigr.org/tdb/tgi/mtgi/) MtGI Release 5.0 as well as both positive and negative controls. Details of this oligo set are available at the Qiagen Operon website. The oligos were spotted in 3x SSC onto Superamine (Telechem) glass slides by the Galbraith lab at the University of Arizona (Tucson, AZ). A single array element was printed per oligo. After printing, slides were baked at 80°C for 1 hour and stored at RT.
Contributor(s)
Galbraith DW Submission date
Jan 31, 2007
Last update date
Feb 02, 2007
Contact name
Kathryn A VandenBosch
E-mail(s)
vande102@umn.edu Phone
+1 612-624-2755
Organization name
University of Minnesota
Department
Plant Biology
Lab
Kate VandenBosch
Street address
Room 250 BioSci 6022 1445 Gortner Ave
City
St Paul
State/province
MN
ZIP/Postal code
55108
Country
USA
Samples (36)
GSM160107 , GSM160108 , GSM160109 , GSM160110 , GSM160111 , GSM160112
GSM160113 ,
GSM160114 ,
GSM160115 ,
GSM160116 ,
GSM160117 ,
GSM160118 ,
GSM160119 ,
GSM160120 ,
GSM160121 ,
GSM160122 ,
GSM160123 ,
GSM160124 ,
GSM160125 ,
GSM160126 ,
GSM160127 ,
GSM160128 ,
GSM160129 ,
GSM160130 ,
GSM168743 ,
GSM168744 ,
GSM168745 ,
GSM168746 ,
GSM168747 ,
GSM168748 ,
GSM211176 ,
GSM211177 ,
GSM211178 ,
GSM211179 ,
GSM211180 ,
GSM211181 Series (3)
GSE6946 Transcript analysis of aluminum tolerance responses in Medicago truncatula
GSE7066 Transcript analysis of aluminum tolerance responses in Medicago truncatula (A17)
GSE8509 Responses in Medicago truncatula to Sinorhizobium meliloti wild type or the succinoglycan-deficient exoY mutant.
Data table header descriptions ID Oligo ID Oligo ID
TC TIGR Medicago Gene Index Tentative Consensus sequence number
GB_ACC GenBank accession
SPOT_ID Description TC annotation
Block Block
Row Row
Column Column
Data table ID Oligo ID TC GB_ACC SPOT_ID Description Block Row Column 1
MT000106
TC76584
TIGR:TC76584
acid phosphatase (EC 3.1.3.-) - soybean, partial (90%), similar to PIR|T07086|T07086
1
1
1
2
MT000130
TC85403
TIGR:TC85403
hypothetical protein F10M23.150 - Arabidopsis thaliana, partial (94%), similar to PIR|T04804|T04804
1
1
2
3
MT000154
TC76725
TIGR:TC76725
NADH dehydrogenase 10.5K chain-like protein {Arabidopsis thaliana}, partial (95%), similar to GP|10177925|dbj|BAB11336.
1
1
3
4
MT000178
TC76752
TIGR:TC76752
40S ribosomal protein S5 (Fragment). [Chickpea Garbanzo] {Cicer arietinum}, partial (97%), homologue to SP|O65731|RS5_CICAR
1
1
4
5
MT000102
TC85298
TIGR:TC85298
Chlorophyll A-B binding protein 215 chloroplast precursor (LHCII type II CAB-215) (LHCP)., complete, homologue to SP|P27520|CB23_PEA
1
1
5
6
MT000126
TC85379
TIGR:TC85379
S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50) (AdoMetDC) (SamDC), partial (93%), similar to SP|Q43820|DCAM_PEA
1
1
6
7
MT000150
TC85477
TIGR:TC85477
isoflavone reductase
1
1
7
8
MT000174
TC85530
TIGR:TC85530
60S ribosomal protein L21 {Oryza sativa}, complete, similar to GP|13489167|gb|AAK27801.1
1
1
8
9
MT000098
TC76420
TIGR:TC76420
hypothetical protein F1P2.100 - Arabidopsis thaliana, partial (67%), similar to PIR|T45715|T45715
1
1
9
10
MT000122
TC76612
TIGR:TC76612
ribosomal protein L23 {Spinacia oleracea}, partial (94%), homologue to GP|7340791|emb|CAA63107.1
1
1
10
11
MT000146
TC76662
TIGR:TC76662
leginsulin {Glycine max}, partial (25%), weakly similar to GP|2815007|emb|CAA11040.1
1
1
11
12
MT000170
TC76778
TIGR:TC76778
aminotransferase 2 {Cucumis melo}, partial (28%), homologue to GP|18158221|gb|AAL62332.1
1
1
12
13
MT000486
TC77319
TIGR:TC77319
respiratory burst oxidase homolog {Solanum tuberosum}, partial (42%), similar to GP|16549089|dbj|BAB70751.
1
1
13
14
MT000510
TC77294
TIGR:TC77294
RSH-like protein {Capsicum annuum}, partial (2%), homologue to GP|15081594|gb|AAK82651.1
1
1
14
15
MT000534
TC77314
TIGR:TC77314
PS60 {Nicotiana tabacum}, partial (95%), similar to GP|1255951|emb|CAA65634.1
1
1
15
16
MT000558
TC86143
TIGR:TC86143
RAB7A {Lotus japonicus}, partial (96%), similar to GP|1370182|emb|CAA98168.1
1
1
16
17
MT000482
TC77179
TIGR:TC77179
calcium-dependent protein kinase {Fragaria x ananassa}, partial (92%), similar to GP|2665890|gb|AAB88537.1|
1
1
17
18
MT000506
TC77330
TIGR:TC77330
CPRD2 {Vigna unguiculata}, partial (29%), similar to GP|13161397|dbj|BAB33033.
1
1
18
19
MT000530
TC77232
TIGR:TC77232
D-3-phosphoglycerate dehydrogenase chloroplast precursor (EC 1.1.1.95) (3-PGDH). [Mouse-ear cress], partial (87%), similar to SP|O04130|SERA_ARATH
1
1
19
20
MT000554
TC77007
TIGR:TC77007
tonoplast intrinsic protein delta type - upland cotton, complete, similar to PIR|T10804|T10804
1
1
20
16278 2215 Kbytes .Supplementary data files not provided
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