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Platform GPL4876 Query DataSets for GPL4876
Status Public on Feb 21, 2007
Title Maize cDNA Generation II Version A
Technology type spotted DNA/cDNA
Distribution non-commercial
Organism Zea mays
Manufacturer Schnable Laboratory at Iowa State University(ISU)
Manufacture protocol The ISU microarray facility have generated a maize gene chip that contains 13,056 spotted cDNA inserts. In this chip there are 12 x 4 subgrids, each grid contains 17x16=272 spots, totally the number of spots=14x4x272=13056, which includes 1056 empty spots, 22 unknown spots and 211 exogenous spots. After removing these uninformative spots, 11767 informative spots will be left for analysis.
 
Description These cDNA clones were obtained from NSF Plant Genome EST projects led by Ginny Walbot and Pat Schnable.
 
Contributor(s) Patrick SS
Submission date Feb 16, 2007
Last update date Feb 21, 2007
Contact name Patrick S. Schnable
E-mail(s) schnable@iastate.edu
Phone 515-294-0975
Organization name Iowa State University
Street address 2035B Roy J Carver Co-Lab
City Ames
State/province IA
ZIP/Postal code 50011
Country USA
 

Data table header descriptions
ID
meta_row The number of rows of subgrids
meta_col The number of columns of subgrids
row1 The number of rows of spots contained within the grid
col The number of columns of spots contained within the grid
ref Plate source refer information of spots
GB_ACC GeneBank Accession Number of spots
CLONE_ID Clone ID in GenBank
SPOT_ID Identify the feature of spots without GB_ACC
SPOT_INFO Specifies spot category - Maize Gene, Exogenous (Human Control Gene), Empty (The original source plate well was empty or add "blank" to chip to fill the matrix)

Data table
ID meta_row meta_col row1 col ref GB_ACC CLONE_ID SPOT_ID SPOT_INFO
1 1 1 1 1 stan2124h-m-13-AI795412 AI795412 614009D10.x2 Maize Gene
2 1 1 1 2 stan2124h-i-13-AI795389 AI795389 614009B10.x2 Maize Gene
3 1 1 1 3 stan2124h-e-13-AI795411 AI795411 614009D09.x2 Maize Gene
4 1 1 1 4 stan2124h-a-13-AI795410 AI795410 614009D08.x2 Maize Gene
5 1 1 1 5 stan2124h-m-9-AI795386 AI795386 614009B06.x2 Maize Gene
6 1 1 1 6 stan2124h-i-9-AI795396 AI795396 614009C05.x2 Maize Gene
7 1 1 1 7 stan2124h-e-9-AI795558 AI795558 614009G04.x2 Maize Gene
8 1 1 1 8 stan2124h-a-9-AI795384 AI795384 614009B04.x2 Maize Gene
9 1 1 1 9 stan2124h-m-5-AW000058 AW000058 614008G12.y1 Maize Gene
10 1 1 1 10 stan2124h-i-5-AW000036 AW000036 614008E12.y1 Maize Gene
11 1 1 1 11 stan2124h-e-5-AW000013 AW000013 614008C12.y1 Maize Gene
12 1 1 1 12 stan2124h-a-5-614008F11.y1 614008F11.y1 Maize Gene
13 1 1 1 13 stan2124h-m-1-AI999990 AI999990 614008A09.y1 Maize Gene
14 1 1 1 14 stan2124h-i-1-AI783112 AI783112 614008F07.x2 Maize Gene
15 1 1 1 15 stan2124h-e-1-AI999988 AI999988 614008A07.y1 Maize Gene
16 1 1 1 16 stan2124h-a-1-AW000019 AW000019 614008D06.y1 Maize Gene
17 1 1 2 1 stan2027h-m-5-AI783002 AI783002 614005B08.x2 Maize Gene
18 1 1 2 2 stan2027h-i-5-AI782870 AI782870 614005H06.x2 Maize Gene
19 1 1 2 3 stan2027h-e-5-AI783023 AI783023 614005D06.x2 Maize Gene
20 1 1 2 4 stan2027h-a-5-AI782860 AI782860 614005G05.x2 Maize Gene

Total number of rows: 13056

Table truncated, full table size 915 Kbytes.




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