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Platform GPL4882 Query DataSets for GPL4882
Status Public on Sep 30, 2007
Title NMC Homo sapiens 21K Hs-OperonV2
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Homo sapiens
Manufacturer Norwegian Microarray Consortium (Radiumhospital, Oslo, Norway)
Manufacture protocol Array Production Details:
•Spotting Instrumentation: MicroGrid II arrayer (model# 600),
MicroSpot pin tool (Cat# BR001482),
MicroSpot 10 K Split pins (Cat# BR001489),
BioRobotics (see the description for the MicroGrid arrayer at the Genomic Solutions website)
•Slide substrates: CMT UltraGAPS slides (25x75 mm) , Aminosilane coating (Corning Cat# 40016)
•Oligonucleotide consentration: 40 μM (600 pmol oligonucleotide dissolved in 15 μL 50% DMSO)
•Spotting buffer: 50% Dimethyl Sulphoxide (DMSO), (Sigma Cat# D-8418)
Support glass
Coating aminosilane
 
Description •Printing plates: 384 well low profile plates from Genetix (Cat# X60004)
•Spotting conditions: 20–22°C and at 45–55% RH.
•Slide post-processing: Slides are stored in a desicator cabinet to dry for 24-48 hours after spotting, and UV-crosslinked at 800 mJ/cm2
(active side up) using a UV-Stratalinker 2400 from Stratagene Inc. The arrays are stored in Corning slide boxes before use.
 
Contributor(s) Duale N, Brunborg G
Submission date Feb 21, 2007
Last update date Jan 18, 2013
Contact name Nur Duale
Organization name Norwegian Institute of Public Health
Department Division of Climate and Environment Health
Street address Lovisenbergg. 8, P.O.Box 4404 Nydalen,
City Oslo
ZIP/Postal code N-0403
Country Norway
 
Samples (12) GSM182060, GSM183188, GSM183189, GSM183190, GSM183191, GSM183192 
Series (1)
GSE7563 Molecular portrait of cisplatin induced response in human testis cancer cell lines based on gene expression profiles

Data table header descriptions
ID
UniGene ID UniGene ID, human build #197, Dec 2006
Gene_symbol UniGene symbol
Gene_description UniGene description
GB_accession GenBank accession number
REFSEQ RefSeq accession number
GB_LIST GenBank accession numbers
ORF
SPOT_ID
description_RefSeq RefSeq description
chromosome Chromosome number
gene_id Ensemble gene ID
transcript_id Ensemble transcript ID
SPOT ID Spot identifier

Data table
ID UniGene ID Gene_symbol Gene_description GB_accession REFSEQ GB_LIST ORF SPOT_ID description_RefSeq chromosome gene_id transcript_id SPOT ID
H200000001 Hs.2 NAT2 N-acetyltransferase 2 (arylamine N-acetyltransferase) BC067218,D90042 NM_000015 NM_000015 NAT2 N-acetyltransferase 2 (arylamine N-acetyltransferase) 8 ENSG00000156006 ENST00000286479 H200000001
H200000002 Hs.4 ADH1C Alcohol dehydrogenase 1C (class I), gamma polypeptide AF153821 AF153821 ADH1C Alcohol dehydrogenase 1C (class I). gamma polypeptide H200000002
H200000003 Hs.11 CEACAM3 Carcinoembryonic antigen-related cell adhesion molecule 3 NM_001815 NM_001815 CEACAM3 Carcinoembryonic antigen-related cell adhesion molecule 3 19 ENSG00000170956 ENST00000221999 H200000003
H200000004 Hs.12 CEACAM4 Carcinoembryonic antigen-related cell adhesion molecule 4 D90276 NM_001817 NM_001817 CEACAM4 Carcinoembryonic antigen-related cell adhesion molecule 4 19 ENSG00000105352 ENST00000221954 H200000004
H200000005 Hs.508950 TGM1 Transglutaminase 1 (K polypeptide epidermal type I, protein-glutamine-gamma-glutamyltransferase) BC034699 NM_000359 NM_000359 TGM1 Transglutaminase 1 (K polypeptide epidermal type I. protein-glutamine-gamma-glutamyltransferase) 14 ENSG00000092295 ENST00000206765 H200000005
H200000006 Hs.465221 FECH Ferrochelatase (protoporphyria) D00726,BX571744 NM_000140 NM_000140 FECH Ferrochelatase (protoporphyria) 18 ENSG00000066926 ENST00000262093 H200000006
H200000007 Hs.584238 GLDC Glycine dehydrogenase (decarboxylating) D90239 NM_000170 NM_000170 GLDC Glycine dehydrogenase (decarboxylating) 9 H200000007
H200000008 Hs.386748 MS4A2 Membrane-spanning 4-domains, subfamily A, member 2 (Fc fragment of IgE, high affinity I, receptor for; beta polypeptide) NM_000139 NM_000139 MS4A2 Membrane-spanning 4-domains. subfamily A. member 2 (Fc fragment of IgE. high affinity I. receptor for: beta polypeptide) 11 ENSG00000149534 ENST00000278888 H200000008
H200000009 Hs.402773 PTPN7 Protein tyrosine phosphatase, non-receptor type 7 M64322 M64322 PTPN7 Protein tyrosine phosphatase. non-receptor type 7 H200000009
H200000010 Hs.36 LTA Lymphotoxin alpha (TNF superfamily, member 1) D12614 NM_000595 NM_000595 LTA Lymphotoxin alpha (TNF superfamily. member 1) 6 ENSG00000173503 ENST00000309399 H200000010
H200000011 Hs.232375 ACAT1 Acetyl-Coenzyme A acetyltransferase 1 (acetoacetyl Coenzyme A thiolase) BC063853 NM_000019 NM_000019 ACAT1 Acetyl-Coenzyme A acetyltransferase 1 (acetoacetyl Coenzyme A thiolase) 11 ENSG00000075239 ENST00000265838 H200000011
H200000012 Hs.41 CEACAM8 Carcinoembryonic antigen-related cell adhesion molecule 8 D90064,BC026263 NM_001816 NM_001816 CEACAM8 Carcinoembryonic antigen-related cell adhesion molecule 8 19 H200000012
H200000013 Hs.371249 PTN Pleiotrophin (heparin binding growth factor 8, neurite growth-promoting factor 1) PTN Pleiotrophin (heparin binding growth factor 8. neurite growth-promoting factor 1) H200000013
H200000014 Hs.433540 DNAJC8 DnaJ (Hsp40) homolog, subfamily C, member 8 CD013879,D10202 NM_000952 NM_000952 DNAJC8 DnaJ (Hsp40) homolog. subfamily C. member 8 1 ENSG00000169403 ENST00000305392 H200000014
H200000015 Hs.147635 MSR1 Macrophage scavenger receptor 1 MSR1 Macrophage scavenger receptor 1 H200000015
H200000016 Hs.137154 PIGA Phosphatidylinositol glycan anchor biosynthesis, class A (paroxysmal nocturnal hemoglobinuria) BC038236,D11466 NM_002641,NM_020472,NM_020473 NM_002641, NM_020472, NM_020473 PIGA Phosphatidylinositol glycan anchor biosynthesis. class A (paroxysmal nocturnal hemoglobinuria) X ENSG00000165195 ENST00000358698,ENST00000297902 H200000016
H200000017 Hs.56 PRPS1 Phosphoribosyl pyrophosphate synthetase 1 PRPS1 Phosphoribosyl pyrophosphate synthetase 1 H200000017
H200000018 Hs.61812 PTPN12 Protein tyrosine phosphatase, non-receptor type 12 M93425,BC050008 NM_002835 NM_002835 PTPN12 Protein tyrosine phosphatase. non-receptor type 12 7 ENSG00000127947 ENST00000248594 H200000018
H200000019 Hs.465924 SDHB Succinate dehydrogenase complex, subunit B, iron sulfur (Ip) BQ073692 NM_003000 NM_003000 SDHB Succinate dehydrogenase complex. subunit B. iron sulfur (Ip) 1 ENSG00000117118 ENST00000235768 H200000019
H200000020 Hs.66 IL1RL1 Interleukin 1 receptor-like 1 AB012701 NM_016232 NM_016232 IL1RL1 Interleukin 1 receptor-like 1 2 ENSG00000115602 ENST00000233954 H200000020

Total number of rows: 21329

Table truncated, full table size 3624 Kbytes.






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Supplementary file Size Download File type/resource
GPL4882.txt.gz 386.7 Kb (ftp)(http) TXT

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