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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Mar 16, 2007 |
| Title |
UCSF Cancer Center HumArray2.0 |
| Technology type |
spotted DNA/cDNA |
| Distribution |
non-commercial |
| Organism |
Homo sapiens |
| Manufacturer |
UCSF Cancer Center Array Core Facility |
| Manufacture protocol |
For a detailed description on how the arrays were made please refer to: Snijders et al. Nat Genet. 2001 Nov;29(3):263-4.
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| Support |
glass |
| Coating |
chromium |
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| Web link |
http://cancer.ucsf.edu/array/
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| Contributor(s) |
Snijders A |
| Submission date |
Mar 15, 2007 |
| Last update date |
Dec 12, 2007 |
| Contact name |
Antoine Snijders |
| E-mail(s) |
snijders@cc.ucsf.edu
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| Organization name |
University of California San Francisco
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| Department |
Cancer Research Institute
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| Street address |
2340 Sutter Street
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| City |
San Francisco |
| State/province |
CA |
| ZIP/Postal code |
94115 |
| Country |
USA |
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| Samples (255)
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GSM175507, GSM175508, GSM175509, GSM175510, GSM175511, GSM175512
GSM175513, GSM175514, GSM175515, GSM175516, GSM175517, GSM175518, GSM175519, GSM175520, GSM175521, GSM175522, GSM175523, GSM175524, GSM175525, GSM175526, GSM175527, GSM175528, GSM175529, GSM215480, GSM215481, GSM215482, GSM215483, GSM215484, GSM215485, GSM215486, GSM215487, GSM215488, GSM215489, GSM215490, GSM215491, GSM215492, GSM215493, GSM215494, GSM215495, GSM215496, GSM215497, GSM215498, GSM215499, GSM215500, GSM215501, GSM215502, GSM215503, GSM215504, GSM215505, GSM215506, GSM215507, GSM215508, GSM215509, GSM215510, GSM215511, GSM215512, GSM215513, GSM215514, GSM215515, GSM215516, GSM215517, GSM215518, GSM215519, GSM215520, GSM215521, GSM215522, GSM215523, GSM215524, GSM215525, GSM215526, GSM215527, GSM215528, GSM215529, GSM215530, GSM215531, GSM215532, GSM215533, GSM215534, GSM215535, GSM215536, GSM215537, GSM215538, GSM215539, GSM215540, GSM215541, GSM215542, GSM215543, GSM215544, GSM215545, GSM215546, GSM218667, GSM218668, GSM218669, GSM218670, GSM218671, GSM218672, GSM218673, GSM218674, GSM218675, GSM218676, GSM218677, GSM218678, GSM218679, GSM218680, GSM218681, GSM218682, GSM218683, GSM218684, GSM218685, GSM218686, GSM218687, GSM218688, GSM218689, GSM218690, GSM218691, GSM218692, GSM218693, GSM218694, GSM218695, GSM218696, GSM218697, GSM218698, GSM218699, GSM218700, GSM218701, GSM218702, GSM218703, GSM218704, GSM218705, GSM218706, GSM218707, GSM218708, GSM218709, GSM218710, GSM218711, GSM218712, GSM218713, GSM218714, GSM218715, GSM218716, GSM218717, GSM218718, GSM218719, GSM218720, GSM218721, GSM218722, GSM218723, GSM218724, GSM218725, GSM218726, GSM218727, GSM218728, GSM218729, GSM218730, GSM218731, GSM218732, GSM218733, GSM218734, GSM218735, GSM218736, GSM218737, GSM475812, GSM475813, GSM475814, GSM475815, GSM475816, GSM475817, GSM475818, GSM475819, GSM475820, GSM475821, GSM475822, GSM475823, GSM475824, GSM475825, GSM475826, GSM475827, GSM475828, GSM475829, GSM475830, GSM475831, GSM475832, GSM475833, GSM475834, GSM475835, GSM475836, GSM475837, GSM475838, GSM475839, GSM475840, GSM475841, GSM475842, GSM475843, GSM475844, GSM475845, GSM475846, GSM475847, GSM475848, GSM475849, GSM475850, GSM475851, GSM475852, GSM475853, GSM475854, GSM475855, GSM475856, GSM475857, GSM475858, GSM475859, GSM475860, GSM475861, GSM475862, GSM475863, GSM475864, GSM475865, GSM475866, GSM475867, GSM475868, GSM475869, GSM702141, GSM702142, GSM702143, GSM702144, GSM702145, GSM702146, GSM702147, GSM702148, GSM702149, GSM702150, GSM702151, GSM702152, GSM702153, GSM702154, GSM702155, GSM702156, GSM702157, GSM702158, GSM702159, GSM702160, GSM702161, GSM702162, GSM702163, GSM702164, GSM702165, GSM702166, GSM702167, GSM702168, GSM702169, GSM702170, GSM702171, GSM702172, GSM702173, GSM702174, GSM702175, GSM702176
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| Series (6)
|
| GSE7274 |
Shaping of Tumor and Drug Resistant Genomes by Instability and Selection |
| GSE8695 |
Interplay between genetic background and genome evolution |
| GSE8801 |
aCGH data from age-dichotomized ER+ breast tumors |
| GSE19193 |
CGH data from 58 bladder tumors |
| GSE19195 |
Analysis of copy number profiles of several tumor samples of same patient reveals the successive steps in tumorigenesis |
| GSE28407 |
Diverse routes to oral cancer differing in genome instability and risk for cervical node metastasis |
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| Data table header descriptions |
| ID |
Unique identifier for each BAC clone corresponding to the position in 864 well print plate |
| CLONE_ID |
BAC clone ID |
| CHROMOSOME |
Chromosome onto which BAC clone maps |
| KB_POSITION |
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| Position |
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| CLONENOTES |
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| MAPPING_NAME |
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| MAP_SOURCE |
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| MARKER_NAMES |
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| CM |
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| cM_MGD |
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| GB4 |
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| G3 |
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| FISH |
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| FISH_2 |
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| SPOT_ID |
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| Data table |
| ID |
CLONE_ID |
CHROMOSOME |
KB_POSITION |
Position |
CLONENOTES |
MAPPING_NAME |
MAP_SOURCE |
MARKER_NAMES |
CM |
cM_MGD |
GB4 |
G3 |
FISH |
FISH_2 |
SPOT_ID |
| HumArray2H11_N30 |
GS1-232B23 |
1 |
0 |
1 |
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TELOMERE |
1 p tel |
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|
1 p tel |
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Marker: 1 p tel |
| HumArray2H11_C9 |
RP11-82D16 |
1 |
1008 |
2 |
|
RP11-82D16 |
fishClones.txt |
AFM214YG7;D1S243 |
0 |
|
14.16 |
12 |
1p36 |
|
Marker: AFM214YG7;D1S243 |
| HumArray2H10_N30 |
RP11-62M23 |
1 |
3767 |
3 |
|
RP11-62M23 |
fishClones.txt |
AFM280WE5;D1S468 |
6.2 |
|
17.52 |
96 |
1p36 |
|
Marker: AFM280WE5;D1S468 |
| HumArray2H10_B18 |
RP11-111O5 |
1 |
4738 |
4 |
|
RP11-111O5 |
fishClones.txt |
AFM123XC3;D1S2893 |
12.8 |
|
21.19 |
124 |
1p36 |
|
Marker: AFM123XC3;D1S2893 |
| HumArray2H10_Q30 |
RP11-51B4 |
1 |
6346 |
5 |
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AFM254WB9 |
stsMap.txt |
AFM254WB9;D1S253 |
16.4 |
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23.89 |
195 |
1p36.3 |
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Marker: AFM254WB9;D1S253 |
| HumArray2H10_T30 |
RP11-60J11 |
1 |
7621 |
6 |
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RP11-60J11 |
fishClones.txt |
AFMA210XG9;D1S2663 |
16.9 |
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26.29 |
290 |
1p36.2 |
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Marker: AFMA210XG9;D1S2663 |
| HumArray2H10_B19 |
RP11-813J5 |
1 |
10417 |
7 |
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INTERPOL_GB4 |
A006Z42;p110D |
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|
1p36.2 |
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Marker: A006Z42;p110D |
| HumArray2H10_W30 |
RP11-199O1 |
1 |
11074 |
8 |
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AFM220YF4 |
stsMap.txt |
AFM220YF4;D1S244 |
22.9 |
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45.64 |
508 |
1p36.3 |
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Marker: AFM220YF4;D1S244 |
| HumArray2H9_C14 |
RP11-188F7 |
1 |
13178 |
9 |
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RP11-188F7 |
fishClones.txt |
AFM217YH8;D1S434 |
32.2 |
|
51.32 |
590 |
1p36 |
|
Marker: AFM217YH8;D1S434 |
| HumArray2H9_F14 |
RP11-178M15 |
1 |
14564 |
10 |
|
RP11-178M15 |
fishClones.txt |
AFM196XB4;D1S228 |
32.4 |
|
|
782 |
1p36.2-.3 |
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Marker: AFM196XB4;D1S228 |
| HumArray2H9_I14 |
RP11-219F4 |
1 |
15607 |
11 |
|
RP11-219F4 |
fishClones.txt |
AFMA127ZC9;D1S507 |
36.2 |
|
61.06 |
827 |
1p36.2-.3 |
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Marker: AFMA127ZC9;D1S507 |
| HumArray2H9_A23 |
RP11-265F14 |
1 |
16337 |
12 |
|
RP11-265F14 |
fishClones.txt |
AFM217ZC3 |
39.9 |
|
|
|
1p36 |
|
Marker: AFM217ZC3 |
| HumArray2H9_L14 |
RP11-145C4 |
1 |
20645 |
13 |
|
RP11-145C4 |
fishClones.txt |
AFMA153XE9 |
46.2 |
|
|
|
1p36 |
|
Marker: AFMA153XE9 |
| HumArray2H9_O14 |
RP11-224F8 |
1 |
22329 |
14 |
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RP11-224F8 |
fishClones.txt |
AFM343ZA9;D1S2843 |
48.8 |
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75.41 |
1197 |
1p36.1 |
|
Marker: AFM343ZA9;D1S2843 |
| HumArray2H11_L8 |
CTD-2128D14 |
1 |
23968 |
15 |
|
RH69163 |
stsMap.txt |
M64788;RAP1GA1 |
|
|
74.12 |
|
1p35-1p36.1 |
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Marker: M64788;RAP1GA1 |
| HumArray2H9_B4 |
RP11-139H5 |
1 |
24564 |
16 |
|
RP11-139H5 |
fishClones.txt |
AFM193XB12 |
50.9 |
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1p36.1 |
|
Marker: AFM193XB12 |
| HumArray2H10_E19 |
CTD-2194B23 |
1 |
25446 |
17 |
|
RH64763 |
stsMap.txt |
D1S3214;EPHB2 |
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|
|
|
1p36.2 |
|
Marker: D1S3214;EPHB2 |
| HumArray2H9_U14 |
RP11-72I19 |
1 |
25570 |
18 |
|
RP11-72I19 |
fishClones.txt |
AFM113XC7 |
54.2 |
|
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|
1p35-36 |
|
Marker: AFM113XC7 |
| HumArray2H9_R14 |
RP11-57F20 |
1 |
26200 |
19 |
|
RP11-57F20 |
fishClones.txt |
AFM294ZD1;D1S482 |
54.2 |
|
81.92 |
1391 |
1p36.1 |
|
Marker: AFM294ZD1;D1S482 |
| HumArray2H9_C17 |
RP11-4O6 |
1 |
30302 |
20 |
|
RP11-4O6 |
fishClones.txt |
AFMA141ZB1 |
57.8 |
|
|
|
1p35 |
|
Marker: AFMA141ZB1 |
Total number of rows: 2464
Table truncated, full table size 292 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GPL4999_HA20_clonepos_Aug01_0_95.txt.gz |
75.9 Kb |
(ftp)(http) |
TXT |
| GPL4999_HA20_spotclone_Aug01_0_95.txt.gz |
37.9 Kb |
(ftp)(http) |
TXT |
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