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Platform GPL5037 Query DataSets for GPL5037
Status Public on Dec 12, 2008
Title IMB-Mattick Mouse 4k 17
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer LCSciences (Houston, TX, USA)
Manufacture protocol Small RNA probes were designed in the IMB by Larry Croft. LNA-modified RNA probes were synthesized in situ at LCSciences using photogenerated acid coupled with conventional DMT chemistry (LNA-modification ensures Tm-normalization). Synthesis was performed on a µParaflo microfluidic chip. See the LC Sciences web page for additional details.
Catalog number MRA-2001
 
 
Web link http://www.lcsciences.com/
Contributor(s) Croft LJ, Taft RJ, Askarian Amiri M, Zhou X, Simons C, Mattick JS
Submission date Mar 26, 2007
Last update date Dec 12, 2008
Contact name Larry Croft
E-mail(s) l.croft@uq.edu.au
Phone +61 7 3346 2358
Fax +61 7 3346 2111
URL http://www.imb.uq.edu.au/index.html?page=11681&pid=11669
Organization name Institute for Molecular Bioscience
Lab Mattick
Street address The University of Queensland, St Lucia
City Brisbane
State/province QLD
ZIP/Postal code 4072
Country Australia
 
Samples (1) GSM177271
Series (1)
GSE7217 Small RNA survey of mouse genome

Data table header descriptions
ID
PROBE_ID Name of probe
SEQUENCE Sequence of detected RNA (probe sequence target)
ROW row position on array
COLUMN column position on array
POSITION Position on array (single-cell format)
SPOT_ID Identifies empty and control spots
ORF

Data table
ID PROBE_ID SEQUENCE ROW COLUMN POSITION SPOT_ID ORF
1 gapdh_477_442 GGGUGUGAACCACGAGAAAUAUGACAACUCACUCAA 1 1 1-1:1 gapdh_477_442
2 mm8_chr5_8374145_8374221_Lminus GCGCCUCCCACCUCAUCCCCAGGCGGAGGCCCGGGC 1 2 1-1:2 mm8_chr5_8374145_8374221_Lminus
3 mm8_chr4_120270237_120270336_Lminus CUGUGGCAGCCUGCCGCUGUAAACAUCCGACUGAAAGCU 1 3 1-1:3 mm8_chr4_120270237_120270336_Lminus
4 mm8_chr4_136020759_136020837_Lminus UUGGGGUGGGGGUGGGGGGAAUCAUCUUAGGAGAAG 1 4 1-1:4 mm8_chr4_136020759_136020837_Lminus
5 mm8_chr2_156683348_156683431_Rminus GCGCCUCUACCACAGCGGGCGGAGGGCGCGCCGCGCGG 1 5 1-1:5 mm8_chr2_156683348_156683431_Rminus
6 mm8_chrX_72044204_72044311_Lplus CAUAAAUAUUUCAUGGGGGGUCAGCAAGGUGGGCAAGUGG 1 6 1-1:6 mm8_chrX_72044204_72044311_Lplus
7 mm8_chr16_11874465_11874544_Lplus AAGUGGGUAGGCAGUCCAAGUGGCAGGCUGGGAGGC 1 7 1-1:7 mm8_chr16_11874465_11874544_Lplus
8 mmu-miR-16_MIMAT0000527 UAGCAGCACGUAAAUAUUGGCG 1 8 1-1:8 MIRN16
9 mm8_chr19r_7696597_7696689..chr19:53624501-53624593_Rplus AGACCCUACAGUCCCUGAGCAUGGAGAUGAGGCAUUGUCC 1 9 1-1:9 mm8_chr19r_7696597_7696689..chr19:53624501-53624593_Rplus
10 mm8_chr11_5831789_5831896..chr11:5831789-5831896_Rplus ACUGGGUGCCAAGUGAGAGUGUGCUCACUCGGCCGUCUGU 1 10 1-1:10 mm8_chr11_5831789_5831896..chr11:5831789-5831896_Rplus
11 mm8_chr1r_135968936_135969036..chr1:61100926-61101026_Rplus GUGGAGAUAGGUCAAAGCUGGUCUCUAUGAAAGUCAGUGG 1 11 1-1:11 mm8_chr1r_135968936_135969036..chr1:61100926-61101026_Rplus
12 mm8_chr7_78541822_78541923..chr7:78541822-78541923_Rplus GAAGUCUAGCAGAUGCUGUCUUCAGGGGCUGCGCUGCUUU 1 12 1-1:12 mm8_chr7_78541822_78541923..chr7:78541822-78541923_Rplus
13 mm8_chr1r_101882429_101882517..chr1:95187445-95187533_Rplus GCUGUUCAUCCAGAGGACCUGGGUUCCAUUCCCAGAAUCC 1 13 1-1:13 mm8_chr1r_101882429_101882517..chr1:95187445-95187533_Rplus
14 mm8_chr2_70001354_70001459..chr2:70001354-70001459_Rplus UAUGCACACACACAUAUACAUGUGCAUGUCCAUGCAUGUG 1 14 1-1:14 mm8_chr2_70001354_70001459..chr2:70001354-70001459_Rplus
15 mm8_chr1_150015238_150015344..chr1:150015238-150015344_Rplus GAGACAGCUAUAUCAGGGUACUUUCAGCAAAAUCUUGCUA 1 15 1-1:15 mm8_chr1_150015238_150015344..chr1:150015238-150015344_Rplus
16 mm8_chr14r_119622155_119622257..chr14:4356613-4356715_Rplus CAUGGUCCAUCCUUUCAUCUCAGCUCCAAACUUUGUCUCU 1 16 1-1:16 mm8_chr14r_119622155_119622257..chr14:4356613-4356715_Rplus
17 mm8_chr16r_93081351_93081418..chr16:5171041-5171108_Rplus GGGGGAGGCAGGCGGGCCCUUCCCCGGCAG 1 17 1-1:17 mm8_chr16r_93081351_93081418..chr16:5171041-5171108_Rplus
18 mm8_chr5r_16971296_16971373..chr5:135031690-135031767_Rplus CAAUCUGCGGGACCCUGCCGGCCAGGUGGCAAGACUGAU 1 18 1-1:18 mm8_chr5r_16971296_16971373..chr5:135031690-135031767_Rplus
19 mm8_chr8_122309930_122310024..chr8:122309930-122310024_Rplus GCUGAGCUGGGAAGGAGGAAGUGGCCACAGCUAGACAGGU 1 19 1-1:19 mm8_chr8_122309930_122310024..chr8:122309930-122310024_Rplus
20 mm8_chr1_122398564_122398644..chr1:122398564-122398644_Rplus GCCCAUCGGCCGAGUUGACGUCACGGGGAAGGCAGAGCA 1 20 1-1:20 mm8_chr1_122398564_122398644..chr1:122398564-122398644_Rplus

Total number of rows: 3968

Table truncated, full table size 626 Kbytes.




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