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Platform GPL5143 Query DataSets for GPL5143
Status Public on May 01, 2008
Title Clostridium acetobutylicum ATCC824 oligomer ChIP 44k v3
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Clostridium acetobutylicum
Manufacturer Agilent Technologies
Manufacture protocol see the manufacturer's website
Catalog number 016465
Support unknown
Coating unknown
 
Description The design algorithm for 60-mer oligonucleotides was based on a previously published algorithm that tests oligomers from multiple design programs (Paredes, Senger et al., 2007).
 
Contributor(s) Paredes CJ, Senger RS, Papoutsakis ET
Submission date May 02, 2007
Last update date May 01, 2008
Contact name Eleftherios Terry Papoutsakis
E-mail(s) papoutsakis@dbi.udel.edu
Organization name University of Delaware
Department Chemical Engineering
Street address 15 Innovation Way
City Newark
State/province DE
ZIP/Postal code 19711
Country USA
 

Data table header descriptions
ID
ROW Spot location identifier (row on array)
COLUMN Spot location identifier (column on array)
SPOT ID Custom 60-mer and control features identification information
Target The ORF targeted by each 60-mer
ORF
SPOT_ID
ANNOTATION Gene annotation

Data table
ID ROW COLUMN SPOT ID Target ORF SPOT_ID ANNOTATION
1 1 1 GE_BrightCorner GE_BrightCorner GE_BrightCorner Unknown
2 1 2 DarkCorner DarkCorner DarkCorner Unknown
3 1 3 DarkCorner DarkCorner DarkCorner Unknown
4 1 4 DarkCorner DarkCorner DarkCorner Unknown
5 1 5 DarkCorner DarkCorner DarkCorner Unknown
6 1 6 DarkCorner DarkCorner DarkCorner Unknown
7 1 7 DarkCorner DarkCorner DarkCorner Unknown
8 1 8 DarkCorner DarkCorner DarkCorner Unknown
9 1 9 DarkCorner DarkCorner DarkCorner Unknown
10 1 10 DarkCorner DarkCorner DarkCorner Unknown
11 1 11 DarkCorner DarkCorner DarkCorner Unknown
12 1 12 CAP0008_1a44k CAP0008 Hypothetical protein Hypothetical protein
13 1 13 CAC1187_1a44k CAC1187 CAC1187 Hypothetical protein
14 1 14 CAP0114_1a44k CAP0114 Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta
15 1 15 CAC2808_1a44k CAC2808 CAC2808 Endo-1,3(4)-beta-glucanase family 16
16 1 16 CAC3225_3b44k CAC3225 CAC3225 PUR operon repressor, Adenine/guanine phosphoribosyltransferase family
17 1 17 CAC2884_2b44k CAC2884 CAC2884 Predicted membrane protein
18 1 18 CAC1023_2a44k CAC1023 CAC1023 Thioesterase II of alpha/beta hydrolase superfamily
19 1 19 CAC3536_3b44k CAC3536 CAC3536 Type II restriction enzyme, methylase subunit
20 1 20 CAC2040_1d44k CAC2040 CAC2040 Hypothetical protein, CF-5 family

Total number of rows: 45220

Table truncated, full table size 3600 Kbytes.




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Supplementary data files not provided
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