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Platform GPL5186 Query DataSets for GPL5186
Status Public on May 24, 2007
Title SWEGENE H_v3.0.1 35K
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Homo sapiens
Manufacturer Swegene DNA Microarray Resource Centre
Manufacture protocol Arrays were produced by the Swegene DNA micro array resource center at Lund University by using probes from Operon. Probes were recovered in Corning Universal Spotting Solution and printed on amino-silane-coated glass slides (UltraGAPS from Corning) using a MicroGrid2 robot (BioRobotics).
Support glass
Coating aminosilane
 
 
Web link http://swegene.onk.lu.se
Contributor(s) Borg A
Submission date May 21, 2007
Last update date May 24, 2007
Contact name Johan Staaf
Organization name SCIBLU - Swegene Centre for Integrative Biology at Lund University
Street address Medicon Village
City Lund
ZIP/Postal code SE-223 81
Country Sweden
 
Samples (148) GSM304824, GSM304825, GSM304826, GSM304827, GSM304828, GSM304829 
Series (3)
GSE12071 Gene expression variation to predict 10-year survival in lymph-node-negative breast cancer
GSE17031 Tasquinimod, a Quinoline-3-Carboxamide Anti-Angiogenic Agent, treated Prostate Cancer Cell Line in-vivo and in-vitro
GSE19915 Subtype classification, grading, and outcome prediction of urothelial carcinomas by combined mRNA profiling and aCGH

Data table header descriptions
ID
CLONEID Identifier ID for Operon oligo
GB_LIST GenBank and/or RefSeq accession number
SPOT_ID Identifier for spots that do not contain Operon oligo probes
SPOT_ID_DESCRIPTION short description for SPOT_ID
ReporterID Reporter ID for spot, e.g., either CLONE_ID or SPOT_ID or an internal ID for the spot probe
V3.0.3_transcript_id Target Ensembl transcript(s) according to oligo probe provider
V3.0.3_RefSeq Target RefSeq(s) according to oligo probe provider
V3.0.3_GB_accession Target GB accession(s) according to oligo probe provider
V3.0.3_gene_symbol Target gene symbol according to oligo probe provider
V3.0.3_control_description Short description of control probes according to oligo probe provider
ARRAY_BLOCK Array block number, i.e. a number from 1 to 48
BLOCK_COLUMN Column within array block
BLOCK_ROW Row within array block

Data table
ID CLONEID GB_LIST SPOT_ID SPOT_ID_DESCRIPTION ReporterID V3.0.3_transcript_id V3.0.3_RefSeq V3.0.3_GB_accession V3.0.3_gene_symbol V3.0.3_control_description ARRAY_BLOCK BLOCK_COLUMN BLOCK_ROW
1 H200021335 --Actin, beta [Source:RefSeq;Acc:NM_001101] H200021335 Actin, beta [Source:RefSeq;Acc:NM_001101] 1 1 1
2 H200021335 --Actin, beta [Source:RefSeq;Acc:NM_001101] H200021335 Actin, beta [Source:RefSeq;Acc:NM_001101] 1 2 1
3 H200007830 NM_002046, BC078673, U34995 H200007830 ENST00000229239 NM_002046 BC078673,U34995 GAPD Glyceraldehyde-3-phosphate dehydrogenase, liver (EC 1.2.1.12) (GAPDH). [Source:Uniprot/SWISSPROT;Acc:P04406] 1 3 1
4 H200007830 NM_002046, BC078673, U34995 H200007830 ENST00000229239 NM_002046 BC078673,U34995 GAPD Glyceraldehyde-3-phosphate dehydrogenase, liver (EC 1.2.1.12) (GAPDH). [Source:Uniprot/SWISSPROT;Acc:P04406] 1 4 1
5 H200007830 NM_002046, BC078673, U34995 H200007830 ENST00000229239 NM_002046 BC078673,U34995 GAPD Glyceraldehyde-3-phosphate dehydrogenase, liver (EC 1.2.1.12) (GAPDH). [Source:Uniprot/SWISSPROT;Acc:P04406] 1 5 1
6 H200007830 NM_002046, BC078673, U34995 H200007830 ENST00000229239 NM_002046 BC078673,U34995 GAPD Glyceraldehyde-3-phosphate dehydrogenase, liver (EC 1.2.1.12) (GAPDH). [Source:Uniprot/SWISSPROT;Acc:P04406] 1 6 1
7 H300004068 NM_021104, Z12962, BM475490, BM913189, BU533672, BG492848, AF153482 H300004068 ENST00000358888,ENST00000314842,ENST00000321137 NM_021104 Z12962,BM475490,BM913189,BU533672,BG492848,AF153482 RPL41 ribosomal protein L41; 60S ribosomal protein L41; homologue of yeast ribosomal protein YL41; HG12 protein [Homo sapiens]. [Source:RefSeq;Acc:NM_021104] 1 7 1
8 H300004068 NM_021104, Z12962, BM475490, BM913189, BU533672, BG492848, AF153482 H300004068 ENST00000358888,ENST00000314842,ENST00000321137 NM_021104 Z12962,BM475490,BM913189,BU533672,BG492848,AF153482 RPL41 ribosomal protein L41; 60S ribosomal protein L41; homologue of yeast ribosomal protein YL41; HG12 protein [Homo sapiens]. [Source:RefSeq;Acc:NM_021104] 1 8 1
9 H300004068 NM_021104, Z12962, BM475490, BM913189, BU533672, BG492848, AF153482 H300004068 ENST00000358888,ENST00000314842,ENST00000321137 NM_021104 Z12962,BM475490,BM913189,BU533672,BG492848,AF153482 RPL41 ribosomal protein L41; 60S ribosomal protein L41; homologue of yeast ribosomal protein YL41; HG12 protein [Homo sapiens]. [Source:RefSeq;Acc:NM_021104] 1 9 1
10 H300004068 NM_021104, Z12962, BM475490, BM913189, BU533672, BG492848, AF153482 H300004068 ENST00000358888,ENST00000314842,ENST00000321137 NM_021104 Z12962,BM475490,BM913189,BU533672,BG492848,AF153482 RPL41 ribosomal protein L41; 60S ribosomal protein L41; homologue of yeast ribosomal protein YL41; HG12 protein [Homo sapiens]. [Source:RefSeq;Acc:NM_021104] 1 10 1
11 H200021335 --Actin, beta [Source:RefSeq;Acc:NM_001101] H200021335 Actin, beta [Source:RefSeq;Acc:NM_001101] 1 11 1
12 --Corning UniversalSpottingSolution - Negative Control Corning UniversalSpottingSolution - Negative Control UniversalSpottingSolution 1 12 1
13 --Control_pdA pdA 10ng/ul in --Corning UniversalSpottingSolution Control_pdA pdA 10ng/ul in Corning UniversalSpottingSolution Control_pdA 1 13 1
14 --Control_SS-DNA SS-DNA 100ng/ul in --Corning UniversalSpottingSolution Control_SS-DNA SS-DNA 100ng/ul in Corning UniversalSpottingSolution Control_SS-DNA 1 14 1
15 --Corning UniversalSpottingSolution - Negative Control Corning UniversalSpottingSolution - Negative Control UniversalSpottingSolution 1 15 1
16 --Corning UniversalSpottingSolution - Negative Control Corning UniversalSpottingSolution - Negative Control UniversalSpottingSolution 1 16 1
17 --Corning UniversalSpottingSolution - Negative Control Corning UniversalSpottingSolution - Negative Control UniversalSpottingSolution 1 17 1
18 --Control_Cot-1 Cot1 100ng/ul in --Corning UniversalSpottingSolution Control_Cot-1 Cot1 100ng/ul in Corning UniversalSpottingSolution Control_Cot-1 1 18 1
19 --empty empty spot coordinate empty 1 19 1
20 --empty empty spot coordinate empty 1 20 1

Total number of rows: 36288

Table truncated, full table size 3766 Kbytes.




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