NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL5254 Query DataSets for GPL5254
Status Public on May 25, 2007
Title AFFY Human Phase3 v1.0 - C21
Technology type in situ oligonucleotide
Distribution non-commercial
Organism Homo sapiens
Manufacturer Affymetrix
Manufacture protocol Affymetrix standard array manufacture protocol.
Please refer to http://www.affymetrix.com/technology/manufacturing/index.affx for details.
 
 
Web link http://transcriptome.affymetrix.com/publication/hs_whole_genome
Submission date May 23, 2007
Last update date Jul 18, 2007
Contact name Thomas R Gingeras
E-mail(s) tom_gingeras@affymetrix.com
Organization name Affymetrix, Inc.
Street address 3380 Central Expressway
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (14) GSM191155, GSM191431, GSM191704, GSM191977, GSM192247, GSM192520 
Series (1)
GSE7576 RNA Maps Reveal New RNA Classes and a Possible Function for Pervasive Transcription

Data table header descriptions
ID chip_coord_genomic_coord
CHIP_COORD chip coordinate
SEQUENCE probe sequence
RANGE_GB chromosome accession and version upon which probes are mapped
RANGE_START start position of mapped probe relative to RANGE_GB
RANGE_END end position of mapped probe relative to RANGE_GB
RANGE_STRAND chromosomal stand

Data table
ID CHIP_COORD SEQUENCE RANGE_GB RANGE_START RANGE_END RANGE_STRAND
x568_y771_chr1_77867 x568_y771 CAGCTCCTGCTGTCTTCCAATTTGG NC_000001.8 77867 77891 +
x1707_y1375_chr1_77872 x1707_y1375 TGGGGCAGCTCCTGCTGTCTTCCAA NC_000001.8 77872 77896 +
x1614_y385_chr1_77877 x1614_y385 TATTATGGGGCAGCTCCTGCTGTCT NC_000001.8 77877 77901 +
x482_y827_chr1_77882 x482_y827 ACTGGTATTATGGGGCAGCTCCTGC NC_000001.8 77882 77906 +
x1082_y1543_chr1_77887 x1082_y1543 ACTTTACTGGTATTATGGGGCAGCT NC_000001.8 77887 77911 +
x1645_y1941_chr1_77892 x1645_y1941 TTCTCACTTTACTGGTATTATGGGG NC_000001.8 77892 77916 +
x1573_y1225_chr1_77897 x1573_y1225 TCTGCTTCTCACTTTACTGGTATTA NC_000001.8 77897 77921 +
x1224_y761_chr1_77902 x1224_y761 TTATCTCTGCTTCTCACTTTACTGG NC_000001.8 77902 77926 +
x208_y1635_chr1_77907 x208_y1635 CTAGTTTATCTCTGCTTCTCACTTT NC_000001.8 77907 77931 +
x2369_y881_chr1_77912 x2369_y881 TAGGACTAGTTTATCTCTGCTTCTC NC_000001.8 77912 77936 +
x2319_y829_chr1_77917 x2319_y829 CTGTCTAGGACTAGTTTATCTCTGC NC_000001.8 77917 77941 +
x1902_y1203_chr1_77947 x1902_y1203 TGTGAGTGGGCTGCCCCCAACATGA NC_000001.8 77947 77971 +
x1152_y1373_chr1_77952 x1152_y1373 GCCACTGTGAGTGGGCTGCCCCCAA NC_000001.8 77952 77976 +
x567_y1025_chr1_77957 x567_y1025 TCAGGGCCACTGTGAGTGGGCTGCC NC_000001.8 77957 77981 +
x1904_y715_chr1_77962 x1904_y715 TTGGGTCAGGGCCACTGTGAGTGGG NC_000001.8 77962 77986 +
x1974_y1215_chr1_77967 x1974_y1215 CAGAGTTGGGTCAGGGCCACTGTGA NC_000001.8 77967 77991 +
x1013_y973_chr1_77972 x1013_y973 CTAGTCAGAGTTGGGTCAGGGCCAC NC_000001.8 77972 77996 +
x1763_y1955_chr1_77977 x1763_y1955 GGCCTCTAGTCAGAGTTGGGTCAGG NC_000001.8 77977 78001 +
x1169_y715_chr1_77982 x1169_y715 CAAGTGGCCTCTAGTCAGAGTTGGG NC_000001.8 77982 78006 +
x2547_y585_chr1_79041 x2547_y585 GAAATGATCTCCTTATTTCAACCTG NC_000001.8 79041 79065 +

Total number of rows: 3529698

Table truncated, full table size 324992 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL5254.tpmap.bz2 49.6 Mb (ftp)(http) TPMAP

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap