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Platform GPL5255 Query DataSets for GPL5255
Status Public on May 25, 2007
Title AFFY Human Phase3 v1.0 - C22
Technology type in situ oligonucleotide
Distribution non-commercial
Organism Homo sapiens
Manufacturer Affymetrix
Manufacture protocol Affymetrix standard array manufacture protocol.
Please refer to http://www.affymetrix.com/technology/manufacturing/index.affx for details.
 
 
Web link http://transcriptome.affymetrix.com/publication/hs_whole_genome
Submission date May 23, 2007
Last update date Jul 18, 2007
Contact name Thomas R Gingeras
E-mail(s) tom_gingeras@affymetrix.com
Organization name Affymetrix, Inc.
Street address 3380 Central Expressway
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (14) GSM191158, GSM191434, GSM191707, GSM191980, GSM192250, GSM192523 
Series (1)
GSE7576 RNA Maps Reveal New RNA Classes and a Possible Function for Pervasive Transcription

Data table header descriptions
ID chip_coord_genomic_coord
CHIP_COORD chip coordinate
SEQUENCE probe sequence
RANGE_GB chromosome accession and version upon which probes are mapped
RANGE_START start position of mapped probe relative to RANGE_GB
RANGE_END end position of mapped probe relative to RANGE_GB
RANGE_STRAND chromosomal stand

Data table
ID CHIP_COORD SEQUENCE RANGE_GB RANGE_START RANGE_END RANGE_STRAND
x1533_y2397_chr1_163159 x1533_y2397 GTATTTTGAATAAATAGTTTGAATA NC_000001.8 163159 163183 +
x2399_y1673_chr1_163165 x2399_y1673 TGATTTGTATTTTGAATAAATAGTT NC_000001.8 163165 163189 +
x511_y1261_chr1_163170 x511_y1261 GTTGATGATTTGTATTTTGAATAAA NC_000001.8 163170 163194 +
x2195_y1657_chr1_163284 x2195_y1657 TATTTCACCTCTTGGTTTTCATTTT NC_000001.8 163284 163308 +
x1308_y2033_chr1_163289 x1308_y2033 AGAACTATTTCACCTCTTGGTTTTC NC_000001.8 163289 163313 +
x2180_y1979_chr1_163294 x2180_y1979 ATTTCAGAACTATTTCACCTCTTGG NC_000001.8 163294 163318 +
x1285_y1051_chr1_163346 x1285_y1051 TTAGTGCTAATGACTTAGTAATTCA NC_000001.8 163346 163370 +
x218_y1185_chr1_163351 x218_y1185 CAAAATTAGTGCTAATGACTTAGTA NC_000001.8 163351 163375 +
x1886_y357_chr1_163356 x1886_y357 TGGCTCAAAATTAGTGCTAATGACT NC_000001.8 163356 163380 +
x1885_y1281_chr1_163361 x1885_y1281 TTAGTTGGCTCAAAATTAGTGCTAA NC_000001.8 163361 163385 +
x447_y1563_chr1_163366 x447_y1563 ATTAGTTAGTTGGCTCAAAATTAGT NC_000001.8 163366 163390 +
x960_y2501_chr1_608416 x960_y2501 CAATCGAGTAGTACTCCCGGTTGAA NC_000001.8 608416 608440 +
x872_y2153_chr1_608421 x872_y2153 GAGTAGTACTCCCGGTTGAAGCCCC NC_000001.8 608421 608445 +
x116_y1919_chr1_608427 x116_y1919 TACTCCCGGTTGAAGCCCCCATTCG NC_000001.8 608427 608451 +
x932_y1355_chr1_608433 x932_y1355 CGGTTGAAGCCCCCATTCGTATAAT NC_000001.8 608433 608457 +
x1787_y2315_chr1_608438 x1787_y2315 GAAGCCCCCATTCGTATAATAATTA NC_000001.8 608438 608462 +
x894_y1029_chr1_608443 x894_y1029 CCCCATTCGTATAATAATTACATCA NC_000001.8 608443 608467 +
x1175_y1123_chr1_608448 x1175_y1123 TTCGTATAATAATTACATCACAAGA NC_000001.8 608448 608472 +
x993_y1505_chr1_608453 x993_y1505 ATAATAATTACATCACAAGACGTCT NC_000001.8 608453 608477 +
x1487_y917_chr1_608458 x1487_y917 AATTACATCACAAGACGTCTTACAC NC_000001.8 608458 608482 +

Total number of rows: 2943168

Table truncated, full table size 273768 Kbytes.




Download family Format
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Supplementary file Size Download File type/resource
GPL5255.tpmap.bz2 43.2 Mb (ftp)(http) TPMAP

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