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Platform GPL5259 Query DataSets for GPL5259
Status Public on May 25, 2007
Title AFFY Human Phase3 v1.0 - C26
Technology type in situ oligonucleotide
Distribution non-commercial
Organism Homo sapiens
Manufacturer Affymetrix
Manufacture protocol Affymetrix standard array manufacture protocol.
Please refer to http://www.affymetrix.com/technology/manufacturing/index.affx for details.
 
 
Web link http://transcriptome.affymetrix.com/publication/hs_whole_genome
Submission date May 23, 2007
Last update date Jul 30, 2007
Contact name Thomas R Gingeras
E-mail(s) tom_gingeras@affymetrix.com
Organization name Affymetrix, Inc.
Street address 3380 Central Expressway
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (14) GSM191170, GSM191446, GSM191719, GSM191992, GSM192262, GSM192535 
Series (1)
GSE7576 RNA Maps Reveal New RNA Classes and a Possible Function for Pervasive Transcription

Data table header descriptions
ID chip_coord_genomic_coord
CHIP_COORD chip coordinate
SEQUENCE probe sequence
RANGE_GB chromosome accession and version upon which probes are mapped
RANGE_START start position of mapped probe relative to RANGE_GB
RANGE_END end position of mapped probe relative to RANGE_GB
RANGE_STRAND chromosomal stand

Data table
ID CHIP_COORD SEQUENCE RANGE_GB RANGE_START RANGE_END RANGE_STRAND
x2198_y1595_chr1_983564 x2198_y1595 TTGTACCTGATTTTATTACCAGTTT NC_000001.8 983564 983588 +
x90_y2037_chr1_983569 x90_y2037 CCTGATTTTATTACCAGTTTTCATC NC_000001.8 983569 983593 +
x607_y547_chr1_983571 x607_y547 TGATTTTATTACCAGTTTTCATCTG NC_000001.8 983571 983595 +
x2036_y2043_chr1_983572 x2036_y2043 TCAGATGAAAACTGGTAATAAAATC NC_000001.8 983572 983596 +
x2145_y1295_chr1_983574 x2145_y1295 TTTTATTACCAGTTTTCATCTGAAT NC_000001.8 983574 983598 +
x1956_y1165_chr1_983577 x1956_y1165 TGGATTCAGATGAAAACTGGTAATA NC_000001.8 983577 983601 +
x965_y1423_chr1_983579 x965_y1423 TTACCAGTTTTCATCTGAATCCACT NC_000001.8 983579 983603 +
x1779_y1935_chr1_983582 x1779_y1935 CCCAGTGGATTCAGATGAAAACTGG NC_000001.8 983582 983606 +
x1162_y1015_chr1_983584 x1162_y1015 AGTTTTCATCTGAATCCACTGGGGA NC_000001.8 983584 983608 +
x1468_y1189_chr1_983587 x1468_y1189 CATTCCCCAGTGGATTCAGATGAAA NC_000001.8 983587 983611 +
x291_y1885_chr1_983616 x291_y1885 GATTTTGCTTTTGTTTCTTGGCCAG NC_000001.8 983616 983640 +
x1081_y231_chr1_4014706 x1081_y231 TATATTCAGCTCCATGGGTTAGAAT NC_000001.8 4014706 4014730 +
x581_y459_chr1_4014711 x581_y459 ATGCTTATATTCAGCTCCATGGGTT NC_000001.8 4014711 4014735 +
x717_y23_chr1_4014716 x717_y23 TCTGAATGCTTATATTCAGCTCCAT NC_000001.8 4014716 4014740 +
x1599_y87_chr1_4014721 x1599_y87 CATCTTCTGAATGCTTATATTCAGC NC_000001.8 4014721 4014745 +
x1709_y253_chr1_4014726 x1709_y253 TTCACCATCTTCTGAATGCTTATAT NC_000001.8 4014726 4014750 +
x514_y373_chr1_4014731 x514_y373 TTTGCTTCACCATCTTCTGAATGCT NC_000001.8 4014731 4014755 +
x2292_y1065_chr1_4014736 x2292_y1065 AGAACTTTGCTTCACCATCTTCTGA NC_000001.8 4014736 4014760 +
x528_y2227_chr1_4014776 x528_y2227 AAGAGCTTTGAGCAAGTTTCTTGGA NC_000001.8 4014776 4014800 +
x564_y101_chr1_4014781 x564_y101 TGAGCAAGAGCTTTGAGCAAGTTTC NC_000001.8 4014781 4014805 +

Total number of rows: 2891363

Table truncated, full table size 266294 Kbytes.




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Supplementary file Size Download File type/resource
GPL5259.tpmap.bz2 42.5 Mb (ftp)(http) TPMAP

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