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Platform GPL5268 Query DataSets for GPL5268
Status Public on May 25, 2007
Title AFFY Human Phase3 v1.0 - C35
Technology type in situ oligonucleotide
Distribution non-commercial
Organism Homo sapiens
Manufacturer Affymetrix
Manufacture protocol Affymetrix standard array manufacture protocol.
Please refer to http://www.affymetrix.com/technology/manufacturing/index.affx for details.
 
 
Web link http://transcriptome.affymetrix.com/publication/hs_whole_genome
Submission date May 23, 2007
Last update date Jul 30, 2007
Contact name Thomas R Gingeras
E-mail(s) tom_gingeras@affymetrix.com
Organization name Affymetrix, Inc.
Street address 3380 Central Expressway
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (14) GSM191197, GSM191473, GSM191746, GSM192019, GSM192289, GSM192562 
Series (1)
GSE7576 RNA Maps Reveal New RNA Classes and a Possible Function for Pervasive Transcription

Data table header descriptions
ID chip_coord_genomic_coord
CHIP_COORD chip coordinate
SEQUENCE probe sequence
RANGE_GB chromosome accession and version upon which probes are mapped
RANGE_START start position of mapped probe relative to RANGE_GB
RANGE_END end position of mapped probe relative to RANGE_GB
RANGE_STRAND chromosomal stand

Data table
ID CHIP_COORD SEQUENCE RANGE_GB RANGE_START RANGE_END RANGE_STRAND
x765_y1705_chr1_604814 x765_y1705 ATAGCTTATTTAGCTGACCTTACTT NC_000001.8 604814 604838 +
x1145_y2311_chr1_604862 x1145_y2311 GGTTATATCCTTCCCGTACTAATTA NC_000001.8 604862 604886 +
x2424_y2479_chr1_606038 x2424_y2479 AAATCAGCCACTTTAATTAAGCTAA NC_000001.8 606038 606062 +
x219_y1471_chr1_606043 x219_y1471 AGCCACTTTAATTAAGCTAAGCCCT NC_000001.8 606043 606067 +
x1137_y2369_chr1_606048 x1137_y2369 CTTTAATTAAGCTAAGCCCTTACTA NC_000001.8 606048 606072 +
x527_y1855_chr1_606048 x527_y1855 TAGTAAGGGCTTAGCTTAATTAAAG NC_000001.8 606048 606072 +
x39_y563_chr1_606117 x39_y563 AGATTGAAGCCAGTTGATTAGGGTG NC_000001.8 606117 606141 +
x1459_y1703_chr1_606121 x1459_y1703 CTAATCAACTGGCTTCAATCTACTT NC_000001.8 606121 606145 +
x1762_y1703_chr1_606121 x1762_y1703 CTAATCAACTGGCTTCAATCTACTT NC_000001.8 606121 606145 +
x1910_y1155_chr1_606122 x1910_y1155 GAAGTAGATTGAAGCCAGTTGATTA NC_000001.8 606122 606146 +
x52_y931_chr1_606126 x52_y931 CAACTGGCTTCAATCTACTTCTCCC NC_000001.8 606126 606150 +
x1473_y2051_chr1_845007 x1473_y2051 CCCACACCTCCCCCCGTGGCAGCTC NC_000001.8 845007 845031 +
x2553_y2167_chr1_845012 x2553_y2167 ACCTCCCCCCGTGGCAGCTCCAACC NC_000001.8 845012 845036 +
x1514_y1991_chr1_845017 x1514_y1991 CCCCCGTGGCAGCTCCAACCCCAGC NC_000001.8 845017 845041 +
x1149_y1645_chr1_845022 x1149_y1645 GTGGCAGCTCCAACCCCAGCTTTTT NC_000001.8 845022 845046 +
x12_y2371_chr1_845027 x12_y2371 AGCTCCAACCCCAGCTTTTTCACTA NC_000001.8 845027 845051 +
x1978_y1843_chr1_845032 x1978_y1843 CAACCCCAGCTTTTTCACTAGTAAG NC_000001.8 845032 845056 +
x1491_y847_chr1_845038 x1491_y847 CAGCTTTTTCACTAGTAAGGCACTC NC_000001.8 845038 845062 +
x1610_y1985_chr1_845137 x1610_y1985 GCCCTCCCGCGGCTCCGGAGCCGGC NC_000001.8 845137 845161 +
x390_y2135_chr1_845143 x390_y2135 CCGCGGCTCCGGAGCCGGCTGCCAC NC_000001.8 845143 845167 +

Total number of rows: 3391105

Table truncated, full table size 321449 Kbytes.




Download family Format
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Supplementary file Size Download File type/resource
GPL5268.tpmap.bz2 48.4 Mb (ftp)(http) TPMAP

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