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Platform GPL5269 Query DataSets for GPL5269
Status Public on May 25, 2007
Title AFFY Human Phase3 v1.0 - C36
Technology type in situ oligonucleotide
Distribution non-commercial
Organism Homo sapiens
Manufacturer Affymetrix
Manufacture protocol Affymetrix standard array manufacture protocol.
Please refer to http://www.affymetrix.com/technology/manufacturing/index.affx for details.
 
 
Web link http://transcriptome.affymetrix.com/publication/hs_whole_genome
Submission date May 23, 2007
Last update date Jul 30, 2007
Contact name Thomas R Gingeras
E-mail(s) tom_gingeras@affymetrix.com
Organization name Affymetrix, Inc.
Street address 3380 Central Expressway
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (14) GSM191200, GSM191476, GSM191749, GSM192022, GSM192292, GSM192565 
Series (1)
GSE7576 RNA Maps Reveal New RNA Classes and a Possible Function for Pervasive Transcription

Data table header descriptions
ID chip_coord_genomic_coord
CHIP_COORD chip coordinate
SEQUENCE probe sequence
RANGE_GB chromosome accession and version upon which probes are mapped
RANGE_START start position of mapped probe relative to RANGE_GB
RANGE_END end position of mapped probe relative to RANGE_GB
RANGE_STRAND chromosomal stand

Data table
ID CHIP_COORD SEQUENCE RANGE_GB RANGE_START RANGE_END RANGE_STRAND
x2229_y1521_chr1_605950 x2229_y1521 AGAGCCTTCAAAGCCCTCAGTAAGT NC_000001.8 605950 605974 +
x127_y129_chr1_606022 x127_y129 TGCATCAACTGAACGCAAATCAGCC NC_000001.8 606022 606046 +
x1724_y435_chr1_606027 x1724_y435 CAACTGAACGCAAATCAGCCACTTT NC_000001.8 606027 606051 +
x802_y2287_chr1_606032 x802_y2287 GAACGCAAATCAGCCACTTTAATTA NC_000001.8 606032 606056 +
x1325_y1125_chr1_606037 x1325_y1125 CAAATCAGCCACTTTAATTAAGCTA NC_000001.8 606037 606061 +
x1326_y2049_chr1_836300 x1326_y2049 GACTTCATTCCTGTTGTTTTTCAAC NC_000001.8 836300 836324 +
x416_y2311_chr1_836305 x416_y2311 CATTCCTGTTGTTTTTCAACTTTTA NC_000001.8 836305 836329 +
x695_y2219_chr1_836322 x695_y2219 AACTTTTACTTCCTCCTCCTCTTCA NC_000001.8 836322 836346 +
x2293_y2391_chr1_8025589 x2293_y2391 GATGTTTACAAGACAATTTTTCAAA NC_000001.8 8025589 8025613 +
x1819_y783_chr1_8052040 x1819_y783 TCTGCTTCTTCTCTTGCTTTGTCTC NC_000001.8 8052040 8052064 +
x1820_y777_chr1_8052045 x1820_y777 TTCTTCTCTTGCTTTGTCTCTGGTC NC_000001.8 8052045 8052069 +
x1160_y373_chr1_8052080 x1160_y373 GGCCAGCTTAAGCAGCTGAGTAGCT NC_000001.8 8052080 8052104 +
x2362_y2265_chr1_8744786 x2362_y2265 CCTGCTGTGCCAGAAACCCTTAAGA NC_000001.8 8744786 8744810 +
x1961_y1819_chr1_8744791 x1961_y1819 TGTGCCAGAAACCCTTAAGAAAAAG NC_000001.8 8744791 8744815 +
x877_y1441_chr1_8745186 x877_y1441 CAAATCTGAAGTCAGTAAATGAACT NC_000001.8 8745186 8745210 +
x856_y7_chr1_8745309 x856_y7 TGGAGGATCTGATTCATGAGATCTA NC_000001.8 8745309 8745333 +
x1218_y1359_chr1_8745365 x1218_y1359 AACTTCCTGTGGCCCTTCAAATTAT NC_000001.8 8745365 8745389 +
x1218_y1359_chr1_8780627 x1218_y1359 AACTTCCTGTGGCCCTTCAAATTAT NC_000001.8 8780627 8780651 +
x877_y1441_chr1_8780806 x877_y1441 CAAATCTGAAGTCAGTAAATGAACT NC_000001.8 8780806 8780830 +
x1961_y1819_chr1_8781201 x1961_y1819 TGTGCCAGAAACCCTTAAGAAAAAG NC_000001.8 8781201 8781225 +

Total number of rows: 2966266

Table truncated, full table size 281604 Kbytes.




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Supplementary file Size Download File type/resource
GPL5269.tpmap.bz2 43.6 Mb (ftp)(http) TPMAP

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