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Platform GPL5273 Query DataSets for GPL5273
Status Public on May 25, 2007
Title AFFY Human Phase3 v1.0 - C40
Technology type in situ oligonucleotide
Distribution non-commercial
Organism Homo sapiens
Manufacturer Affymetrix
Manufacture protocol Affymetrix standard array manufacture protocol.
Please refer to http://www.affymetrix.com/technology/manufacturing/index.affx for details.
 
 
Web link http://transcriptome.affymetrix.com/publication/hs_whole_genome
Submission date May 23, 2007
Last update date Jul 30, 2007
Contact name Thomas R Gingeras
E-mail(s) tom_gingeras@affymetrix.com
Organization name Affymetrix, Inc.
Street address 3380 Central Expressway
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (14) GSM191212, GSM191488, GSM191761, GSM192034, GSM192304, GSM192577 
Series (1)
GSE7576 RNA Maps Reveal New RNA Classes and a Possible Function for Pervasive Transcription

Data table header descriptions
ID chip_coord_genomic_coord
CHIP_COORD chip coordinate
SEQUENCE probe sequence
RANGE_GB chromosome accession and version upon which probes are mapped
RANGE_START start position of mapped probe relative to RANGE_GB
RANGE_END end position of mapped probe relative to RANGE_GB
RANGE_STRAND chromosomal stand

Data table
ID CHIP_COORD SEQUENCE RANGE_GB RANGE_START RANGE_END RANGE_STRAND
x412_y69_chr1_218286 x412_y69 TGTCATAGAGCTTCTTCACAGCCTG NC_000001.8 218286 218310 +
x1495_y915_chr1_218316 x1495_y915 TCTGGTGCTTGTTGGCTTTAACATC NC_000001.8 218316 218340 +
x1363_y1037_chr1_218541 x1363_y1037 GCTGCGGACACCTTTCAACACTGCC NC_000001.8 218541 218565 +
x2298_y1715_chr1_218546 x2298_y1715 GGACACCTTTCAACACTGCCTTCTT NC_000001.8 218546 218570 +
x2338_y1481_chr1_218551 x2338_y1481 CCTTTCAACACTGCCTTCTTGGCCT NC_000001.8 218551 218575 +
x598_y2449_chr1_510829 x598_y2449 CAACACTGCCTTCTTGGCCTTTAAA NC_000001.8 510829 510853 +
x2338_y1481_chr1_510834 x2338_y1481 CCTTTCAACACTGCCTTCTTGGCCT NC_000001.8 510834 510858 +
x2298_y1715_chr1_510839 x2298_y1715 GGACACCTTTCAACACTGCCTTCTT NC_000001.8 510839 510863 +
x1363_y1037_chr1_510844 x1363_y1037 GCTGCGGACACCTTTCAACACTGCC NC_000001.8 510844 510868 +
x1495_y915_chr1_511068 x1495_y915 TCTGGTGCTTGTTGGCTTTAACATC NC_000001.8 511068 511092 +
x412_y69_chr1_511098 x412_y69 TGTCATAGAGCTTCTTCACAGCCTG NC_000001.8 511098 511122 +
x574_y611_chr1_836288 x574_y611 GGTCTTGCCACTGACTTCATTCCTG NC_000001.8 836288 836312 +
x2074_y495_chr1_836293 x2074_y495 TGCCACTGACTTCATTCCTGTTGTT NC_000001.8 836293 836317 +
x2084_y769_chr1_836346 x2084_y769 AGACAGGAGACAGTAAGAGAAATGG NC_000001.8 836346 836370 +
x2300_y1535_chr1_836351 x2300_y1535 GGAGACAGTAAGAGAAATGGCCTCT NC_000001.8 836351 836375 +
x696_y1493_chr1_836356 x696_y1493 CAGTAAGAGAAATGGCCTCTCTCCT NC_000001.8 836356 836380 +
x1644_y253_chr1_1840919 x1644_y253 GTGTGTGTGTGTATATATATATATA NC_000001.8 1840919 1840943 +
x919_y363_chr1_5783087 x919_y363 TATATACACACACAAACACACACCT NC_000001.8 5783087 5783111 +
x814_y559_chr1_5844647 x814_y559 GGAACAAGTGATTATGCTACCTTTG NC_000001.8 5844647 5844671 +
x2149_y1463_chr1_7232520 x2149_y1463 GAAATACTGGATGGTTTTATAGGAT NC_000001.8 7232520 7232544 +

Total number of rows: 2944356

Table truncated, full table size 271045 Kbytes.




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Supplementary file Size Download File type/resource
GPL5273.tpmap.bz2 43.3 Mb (ftp)(http) TPMAP

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