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Platform GPL5276 Query DataSets for GPL5276
Status Public on May 25, 2007
Title AFFY Human Phase3 v1.0 - C43
Technology type in situ oligonucleotide
Distribution non-commercial
Organism Homo sapiens
Manufacturer Affymetrix
Manufacture protocol Affymetrix standard array manufacture protocol.
Please refer to http://www.affymetrix.com/technology/manufacturing/index.affx for details.
 
 
Web link http://transcriptome.affymetrix.com/publication/hs_whole_genome
Submission date May 23, 2007
Last update date Jul 30, 2007
Contact name Thomas R Gingeras
E-mail(s) tom_gingeras@affymetrix.com
Organization name Affymetrix, Inc.
Street address 3380 Central Expressway
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (14) GSM191221, GSM191497, GSM191770, GSM192043, GSM192313, GSM192586 
Series (1)
GSE7576 RNA Maps Reveal New RNA Classes and a Possible Function for Pervasive Transcription

Data table header descriptions
ID chip_coord_genomic_coord
CHIP_COORD chip coordinate
SEQUENCE probe sequence
RANGE_GB chromosome accession and version upon which probes are mapped
RANGE_START start position of mapped probe relative to RANGE_GB
RANGE_END end position of mapped probe relative to RANGE_GB
RANGE_STRAND chromosomal stand

Data table
ID CHIP_COORD SEQUENCE RANGE_GB RANGE_START RANGE_END RANGE_STRAND
x1296_y1755_chr1_218547 x1296_y1755 GACACCTTTCAACACTGCCTTCTTG NC_000001.8 218547 218571 +
x1946_y1711_chr1_218552 x1946_y1711 CTTTCAACACTGCCTTCTTGGCCTT NC_000001.8 218552 218576 +
x1946_y1711_chr1_510833 x1946_y1711 CTTTCAACACTGCCTTCTTGGCCTT NC_000001.8 510833 510857 +
x1296_y1755_chr1_510838 x1296_y1755 GACACCTTTCAACACTGCCTTCTTG NC_000001.8 510838 510862 +
x554_y1699_chr1_606121 x554_y1699 CTAATCAACTGGCTTCAATCTACTT NC_000001.8 606121 606145 +
x814_y935_chr1_606126 x814_y935 CAACTGGCTTCAATCTACTTCTCCC NC_000001.8 606126 606150 +
x204_y2081_chr1_983563 x204_y2081 AACTGGTAATAAAATCAGGTACAAC NC_000001.8 983563 983587 +
x1684_y1545_chr1_983568 x1684_y1545 ATGAAAACTGGTAATAAAATCAGGT NC_000001.8 983568 983592 +
x893_y2265_chr1_983598 x893_y2265 CAAAATCGTCCCATTCCCCAGTGGA NC_000001.8 983598 983622 +
x172_y2215_chr1_983603 x172_y2215 AAAAGCAAAATCGTCCCATTCCCCA NC_000001.8 983603 983627 +
x1445_y1713_chr1_983608 x1445_y1713 GAAACAAAAGCAAAATCGTCCCATT NC_000001.8 983608 983632 +
x1402_y2049_chr1_983613 x1402_y2049 GCCAAGAAACAAAAGCAAAATCGTC NC_000001.8 983613 983637 +
x2271_y2463_chr1_983618 x2271_y2463 TCCTGGCCAAGAAACAAAAGCAAAA NC_000001.8 983618 983642 +
x739_y2533_chr1_5318125 x739_y2533 GTCACAGGAAGGAAGGGAAGAACAA NC_000001.8 5318125 5318149 +
x1647_y259_chr1_7103031 x1647_y259 GTCAATAAATATTTGTTGGATGAAT NC_000001.8 7103031 7103055 +
x933_y1759_chr1_8744744 x933_y1759 CCGGCTGGAACCATGGAGGGTGTTG NC_000001.8 8744744 8744768 +
x371_y653_chr1_8744749 x371_y653 TGGAACCATGGAGGGTGTTGAAGAG NC_000001.8 8744749 8744773 +
x2427_y1305_chr1_8744754 x2427_y1305 CCATGGAGGGTGTTGAAGAGAAGAA NC_000001.8 8744754 8744778 +
x772_y1295_chr1_8744784 x772_y1295 TTCCTGCTGTGCCAGAAACCCTTAA NC_000001.8 8744784 8744808 +
x1570_y2459_chr1_8744789 x1570_y2459 GCTGTGCCAGAAACCCTTAAGAAAA NC_000001.8 8744789 8744813 +

Total number of rows: 2965191

Table truncated, full table size 281324 Kbytes.




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Supplementary file Size Download File type/resource
GPL5276.tpmap.bz2 43.5 Mb (ftp)(http) TPMAP

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