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Platform GPL5280 Query DataSets for GPL5280
Status Public on May 25, 2007
Title AFFY Human Phase3 v1.0 - C47
Technology type in situ oligonucleotide
Distribution non-commercial
Organism Homo sapiens
Manufacturer Affymetrix
Manufacture protocol Affymetrix standard array manufacture protocol.
Please refer to http://www.affymetrix.com/technology/manufacturing/index.affx for details.
 
 
Web link http://transcriptome.affymetrix.com/publication/hs_whole_genome
Submission date May 23, 2007
Last update date Jul 18, 2007
Contact name Thomas R Gingeras
E-mail(s) tom_gingeras@affymetrix.com
Organization name Affymetrix, Inc.
Street address 3380 Central Expressway
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (14) GSM191233, GSM191509, GSM191782, GSM192055, GSM192325, GSM192598 
Series (1)
GSE7576 RNA Maps Reveal New RNA Classes and a Possible Function for Pervasive Transcription

Data table header descriptions
ID chip_coord_genomic_coord
CHIP_COORD chip coordinate
SEQUENCE probe sequence
RANGE_GB chromosome accession and version upon which probes are mapped
RANGE_START start position of mapped probe relative to RANGE_GB
RANGE_END end position of mapped probe relative to RANGE_GB
RANGE_STRAND chromosomal stand

Data table
ID CHIP_COORD SEQUENCE RANGE_GB RANGE_START RANGE_END RANGE_STRAND
x71_y1795_chr1_8051575 x71_y1795 AAAGGCTAAAGAACTTGCCACCAAG NC_000001.8 8051575 8051599 +
x2484_y2149_chr1_8051580 x2484_y2149 AAGGCAAAGGCTAAAGAACTTGCCA NC_000001.8 8051580 8051604 +
x531_y1433_chr1_8051585 x531_y1433 TCAAAAAGGCAAAGGCTAAAGAACT NC_000001.8 8051585 8051609 +
x5_y1955_chr1_8051715 x5_y1955 GAAGACAAAGGAGCTTTGGCTAAGC NC_000001.8 8051715 8051739 +
x901_y757_chr1_8051785 x901_y757 GAAGGCAAGACTGGGACGTCTAGTC NC_000001.8 8051785 8051809 +
x952_y2007_chr1_8051830 x952_y2007 TGCCCTGTGTCGTAAAATGGGGGTC NC_000001.8 8051830 8051854 +
x693_y1919_chr1_8051835 x693_y1919 CTGCCTGCCCTGTGTCGTAAAATGG NC_000001.8 8051835 8051859 +
x2408_y1201_chr1_8051840 x2408_y1201 TCTTCCTGCCTGCCCTGTGTCGTAA NC_000001.8 8051840 8051864 +
x279_y631_chr1_8052041 x279_y631 AGAGACAAAGCAAGAGAAGAAGCAG NC_000001.8 8052041 8052065 +
x1429_y1028_chr1_8052046 x1429_y1028 AGACCAGAGACAAAGCAAGAGAAGA NC_000001.8 8052046 8052070 +
x2432_y127_chr1_10167823 x2432_y127 ATATATATATACACACACACACACA NC_000001.8 10167823 10167847 +
x874_y69_chr1_11063552 x874_y69 GTGTGTGTGTGTGTGTGAGAGAGAG NC_000001.8 11063552 11063576 +
x1212_y117_chr1_11143237 x1212_y117 TATATATATACACACACACACACAC NC_000001.8 11143237 11143261 +
x2432_y127_chr1_11143238 x2432_y127 ATATATATATACACACACACACACA NC_000001.8 11143238 11143262 +
x1190_y1047_chr1_11403792 x1190_y1047 AAATGCTATGGCATCTTTGCCGTGA NC_000001.8 11403792 11403816 +
x172_y727_chr1_11403797 x172_y727 TAATAAAATGCTATGGCATCTTTGC NC_000001.8 11403797 11403821 +
x1271_y1539_chr1_11403827 x1271_y1539 GAAAATATCATTGGTTGACTTTTGT NC_000001.8 11403827 11403851 +
x1147_y331_chr1_11403832 x1147_y331 TCAATGAAAATATCATTGGTTGACT NC_000001.8 11403832 11403856 +
x548_y377_chr1_11403837 x548_y377 ATATTTCAATGAAAATATCATTGGT NC_000001.8 11403837 11403861 +
x1599_y2147_chr1_11403989 x1599_y2147 TGAGAAGGAACAGCCCTAACAGGCC NC_000001.8 11403989 11404013 +

Total number of rows: 2977677

Table truncated, full table size 274112 Kbytes.




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Supplementary file Size Download File type/resource
GPL5280.tpmap.bz2 43.5 Mb (ftp)(http) TPMAP

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